Gene Lcho_3593 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3593 
Symbol 
ID6162763 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4010876 
End bp4012087 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content64% 
IMG OID641666366 
Productputative ABC transporter substrate binding protein 
Protein accessionYP_001792612 
Protein GI171060263 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.636574 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTTCA AGACCCTCAC GCTGGCCGCC GCGCTGGCCG CCGCCTTTGC CCCGGCCCAG 
GCGCAGATCT CCGACAACCT CGTGCGCATC GGCGTGCTGA CCGATCTGTC GGGCGTCTAT
TCCGATGTGG CCGGCAAGGG CACCGTGATC GCCACGCAGA TGGCGATCGA CGACTTCGTC
GCCAAGGAGA AACCGGCCTT CAAGATCGAG TCGATCTCGG CCGACCACCA GAACAAGGGC
GACGTGGCCG CCAACAAGGC CCGCGAATGG TTCGAGCGCG AGAAGATCGA CGTGGTCTCC
GAGCTGGTGA CCACCTCGGT GGCGCTGGCG GTGCAGAAGA TCGCCAAGGA GAAGAACAAG
GTGGTACTGG TTTCGGGCGC AGCCTCGACC CGTGTCACCA ACGAAGACTG CAACGACGTC
ACGGTGCACT GGACCTACGA CACCTACGCG GTCGCCAACG GCACCGCCAA GGCCGTCACC
AAGGCCGGCG GCAAGAAGTG GTTCTTCCTG ACCGCCGACT ACGCATTCGG CCACTCGCTG
GAGAAGGACG CCATCGATGT CGTCAAGGCC AACGGCGGCG AGGTGATGGG CACGGTGCGT
CACCCGTTCC CGGGTTCGGA CTTCTCTTCC TTCCTGCTCA AGGCGCAGTC GTCGGGCGCG
CAGATCATCG GCCTGGCCAA TGCAGGCGGC GACACCATCA ACTCGATCAA GCAGGCCGCC
GAATTCGGCG TCACGCCCAA GCAGCAGCTC GCCGGCCTGT TGATGTTCAT CAGCGACGTG
CATTCGCTGG GCCTGAAGAC CACGCAGTCG ATGTACCTCA CCGAAGGTTT CTACTGGAAC
CTCAACGACG ACACCCGGGC CTGGTCCAAG CGCTTCTTCG AGCAGGCCAA GCGCATGCCG
ACGATGGTGC AGGCCGGCCA GTATTCATCG GTGATGCACT ACCTGAAGGC GGTCAAGGCG
GCCGGTACCG ACGACACCGC AAAGGTGATG GCGCAGATGA AGAAGACCCC CGTCAACGAC
TTCTTCGCCA AGGGCGGCAC GATCCGCGAA GACGGCCGCA TGGTGCACGA CATGTACCTG
CTGCAGGTCA AGAAGCCGGC CGAGTCGACC ACGCCCTGGG ACTACTACAA GGTGGTGGCC
ACGATCCCCG CGGCCGAGGC CTTCCAGCCG CTCGCGGCTT CGAAGTGCGC GCTGGTCAAG
AAGCCTTCCT GA
 
Protein sequence
MTFKTLTLAA ALAAAFAPAQ AQISDNLVRI GVLTDLSGVY SDVAGKGTVI ATQMAIDDFV 
AKEKPAFKIE SISADHQNKG DVAANKAREW FEREKIDVVS ELVTTSVALA VQKIAKEKNK
VVLVSGAAST RVTNEDCNDV TVHWTYDTYA VANGTAKAVT KAGGKKWFFL TADYAFGHSL
EKDAIDVVKA NGGEVMGTVR HPFPGSDFSS FLLKAQSSGA QIIGLANAGG DTINSIKQAA
EFGVTPKQQL AGLLMFISDV HSLGLKTTQS MYLTEGFYWN LNDDTRAWSK RFFEQAKRMP
TMVQAGQYSS VMHYLKAVKA AGTDDTAKVM AQMKKTPVND FFAKGGTIRE DGRMVHDMYL
LQVKKPAEST TPWDYYKVVA TIPAAEAFQP LAASKCALVK KPS