Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3593 |
Symbol | |
ID | 6162763 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4010876 |
End bp | 4012087 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641666366 |
Product | putative ABC transporter substrate binding protein |
Protein accession | YP_001792612 |
Protein GI | 171060263 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.636574 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCTTCA AGACCCTCAC GCTGGCCGCC GCGCTGGCCG CCGCCTTTGC CCCGGCCCAG GCGCAGATCT CCGACAACCT CGTGCGCATC GGCGTGCTGA CCGATCTGTC GGGCGTCTAT TCCGATGTGG CCGGCAAGGG CACCGTGATC GCCACGCAGA TGGCGATCGA CGACTTCGTC GCCAAGGAGA AACCGGCCTT CAAGATCGAG TCGATCTCGG CCGACCACCA GAACAAGGGC GACGTGGCCG CCAACAAGGC CCGCGAATGG TTCGAGCGCG AGAAGATCGA CGTGGTCTCC GAGCTGGTGA CCACCTCGGT GGCGCTGGCG GTGCAGAAGA TCGCCAAGGA GAAGAACAAG GTGGTACTGG TTTCGGGCGC AGCCTCGACC CGTGTCACCA ACGAAGACTG CAACGACGTC ACGGTGCACT GGACCTACGA CACCTACGCG GTCGCCAACG GCACCGCCAA GGCCGTCACC AAGGCCGGCG GCAAGAAGTG GTTCTTCCTG ACCGCCGACT ACGCATTCGG CCACTCGCTG GAGAAGGACG CCATCGATGT CGTCAAGGCC AACGGCGGCG AGGTGATGGG CACGGTGCGT CACCCGTTCC CGGGTTCGGA CTTCTCTTCC TTCCTGCTCA AGGCGCAGTC GTCGGGCGCG CAGATCATCG GCCTGGCCAA TGCAGGCGGC GACACCATCA ACTCGATCAA GCAGGCCGCC GAATTCGGCG TCACGCCCAA GCAGCAGCTC GCCGGCCTGT TGATGTTCAT CAGCGACGTG CATTCGCTGG GCCTGAAGAC CACGCAGTCG ATGTACCTCA CCGAAGGTTT CTACTGGAAC CTCAACGACG ACACCCGGGC CTGGTCCAAG CGCTTCTTCG AGCAGGCCAA GCGCATGCCG ACGATGGTGC AGGCCGGCCA GTATTCATCG GTGATGCACT ACCTGAAGGC GGTCAAGGCG GCCGGTACCG ACGACACCGC AAAGGTGATG GCGCAGATGA AGAAGACCCC CGTCAACGAC TTCTTCGCCA AGGGCGGCAC GATCCGCGAA GACGGCCGCA TGGTGCACGA CATGTACCTG CTGCAGGTCA AGAAGCCGGC CGAGTCGACC ACGCCCTGGG ACTACTACAA GGTGGTGGCC ACGATCCCCG CGGCCGAGGC CTTCCAGCCG CTCGCGGCTT CGAAGTGCGC GCTGGTCAAG AAGCCTTCCT GA
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Protein sequence | MTFKTLTLAA ALAAAFAPAQ AQISDNLVRI GVLTDLSGVY SDVAGKGTVI ATQMAIDDFV AKEKPAFKIE SISADHQNKG DVAANKAREW FEREKIDVVS ELVTTSVALA VQKIAKEKNK VVLVSGAAST RVTNEDCNDV TVHWTYDTYA VANGTAKAVT KAGGKKWFFL TADYAFGHSL EKDAIDVVKA NGGEVMGTVR HPFPGSDFSS FLLKAQSSGA QIIGLANAGG DTINSIKQAA EFGVTPKQQL AGLLMFISDV HSLGLKTTQS MYLTEGFYWN LNDDTRAWSK RFFEQAKRMP TMVQAGQYSS VMHYLKAVKA AGTDDTAKVM AQMKKTPVND FFAKGGTIRE DGRMVHDMYL LQVKKPAEST TPWDYYKVVA TIPAAEAFQP LAASKCALVK KPS
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