Gene RPD_2256 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_2256 
Symbol 
ID4022741 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2518554 
End bp2519765 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content63% 
IMG OID637962451 
Productextracellular ligand-binding receptor 
Protein accessionYP_569392 
Protein GI91976733 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.777349 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.277076 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGATTCA TGAAATACGC GGCGGCGCTG ACGCTGGCCG CTCCGCTGCT GTTCGGCGCG 
TCCGCTTTCG CGCAACAGGG GCCGCTGAAG ATCGGCCTGC TCAGCGACTT CCAGTCGGTG
TATTCCGACA TCGGCGGCGC CGGCAACGCC GAAGCCGCCA AGATGGCGAT CGAGGAGATG
GGCGGCACGA TGTTCGGTCA GCCGATCGAA TTCCTCAGCG CCGACGTCCA GAACAAGCCC
GACATCGCCG CGTCGCTGGC GCGGAAATGG TACGAGAACG AGGGCGTCGA CATGATCGTC
GATCTGCCGA CCTCGGCCAC CGCGCTCGCC GCGATGGAGA TGTCGAAGCG GTTCGAGAAG
ATCATGATCG TCACCGACGC TGCGTCGTCG GACATCACCG GAAAATCCTG CTCGCCCTAC
ACCGCGCACT GGACCTACGA CACTTACTCG AATGCGCACA CCGTGGGCTC GGCGATCGTC
AAGAACGGCG GCGATAGCTG GTTCTTCATC ACCGCCGACT ATCTGTTCGG CCATTCGATC
GAACGCGACA CCGGCGAGGT GGTGAAGGCG GCCGGCGGCA AAGTGGTCGG CAATGCGCGG
CATCCGTTGA ACAACGCCGA CTTCTCGTCG TTCCTGCTGC AGGCGCAGTC GTCCAAGGCC
AAGATCATCG GCATGGCCAA TGGCGGCGGC GACACCATCA ACACCATCAA GCAGGCGGCG
GAGTTCGGCA TTGTCGCCGG CGGCCAGAAG CTCGCCGGCA TCGTGATGTT CATCTCCGAC
ATCCACAGCC TCGGGCTGAA GATGGCGAAC GGGCTGATCA TCACCGAAGC CTATTACTGG
GACCTCAACG ACCGCACCCG CGCCTTCGGC AACAAGTACT TCGAGCGGAT GAAGCGGATG
CCGACGATGA ACCAGGCCGC GACCTACAGC GCCACGCTGC ATTATCTCAA GGCGGTGAAG
GCGGCCGGCA CGAAGGACAC CAAGACGGTG CTGGCGAAGA TGCGCGAAAT GCCTGTGCGC
GACGCCTTCA CCGACAACGG CTTCCTGCGC GAGGACGGCC GCATGGTGCA CTCGATGTTC
CTGTTCGAGG TGAAGAAGCC GGAAGAATCC AAGGCGCCGT GGGACTACTA TAAGGTGCTC
GCCGAAGTCC CCGGCGACCA GGCGTTCCGT CCGATGAAGG ATGGCGGTTG CCCGCACGTG
AAGAAGGATT GA
 
Protein sequence
MRFMKYAAAL TLAAPLLFGA SAFAQQGPLK IGLLSDFQSV YSDIGGAGNA EAAKMAIEEM 
GGTMFGQPIE FLSADVQNKP DIAASLARKW YENEGVDMIV DLPTSATALA AMEMSKRFEK
IMIVTDAASS DITGKSCSPY TAHWTYDTYS NAHTVGSAIV KNGGDSWFFI TADYLFGHSI
ERDTGEVVKA AGGKVVGNAR HPLNNADFSS FLLQAQSSKA KIIGMANGGG DTINTIKQAA
EFGIVAGGQK LAGIVMFISD IHSLGLKMAN GLIITEAYYW DLNDRTRAFG NKYFERMKRM
PTMNQAATYS ATLHYLKAVK AAGTKDTKTV LAKMREMPVR DAFTDNGFLR EDGRMVHSMF
LFEVKKPEES KAPWDYYKVL AEVPGDQAFR PMKDGGCPHV KKD