Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_4400 |
Symbol | |
ID | 4024925 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 4868378 |
End bp | 4869571 |
Gene Length | 1194 bp |
Protein Length | 397 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637964609 |
Product | putative branched chain amino acid periplasmic binding protein of ABC transporter |
Protein accession | YP_571517 |
Protein GI | 91978858 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACATCA AACTTCTCTC CGCCGCGCTG GCGTCCAGCG CCCTGCTTGC CGTTACTCCG GCTTCGGCGC AAGGCGTCAA GATCGGCATC CTCAACGATC AGTCCGGCGT CTATGCCGAC TACGGCGGCA AGTGGTCGCT CGAAGCGGCC AAGATGGCGA TTGAGGATTT CGGCGGCGAA GTGCTCGGCC AGAAGGTCGA ACTGGTTTCC GCCGACCATC AGAACAAGCC CGACACCGCG ATCTCGATTG CGCGCAAATG GTACGACGTC GAGGGCGTCG ACATGATCAC CGAACTGACG ACGTCGTCGG TGGCGCTGGC GATCCAGGAC CTCTCGCGAG AAAAGAAGAA GATCGACATC GTGGTCGGCG CCGCGACTTC GCGCATCACC GGCGACGCCT GCCAGCCCTA TGGCTTCCAC TGGGCGTTCG ACACCCACGC GCTCGCGGTC GGCACCGGCG GCGCGCTGGT GAAGTCGGGC GGCGACACCT GGTTCTTCCT CACCGCGGAC TACGCGTTCG GCTACGCGCT CGAGAAAGAC ACCGGCGAAA TCGTTCAGGC CAGCGGCGGC AAGGTGCTCG GCGCGGTCCG CCATCCGCTG AATTCCTCGG ACTTCTCCTC GTTCCTGCTG CAGGCACAAA GCTCCAAGGC GAAGGTCGTC GGCCTCGCCA ATGCCGGCCT CGACACCGCC AATTCGATCA AGCAGGCGGC GGAATTCGGC GTCGTCGCTG GCGGCCAGAA GCTCGCCGGC CTGCTGATGA CGCTCGCGGA AGTCCACGGC CTCGGCCTCA AGGCGGCGCA GGGCCTGGTG CTGACCGAAG CGTATTACTG GGATCGTGAC GACAAGTCCC GCGAGTTCGC CGATCGGTTC TTCAAGCGCA CCAACCGGAT GCCGAACATG ATCCAGGCCG GTACCTATTC GGCGACGCTG TCCTACCTCA AGGCGGTGAA GGCGGCGGGC ACCAAGGACA CCGAGGCGGT GACGAAGAAG CTCAAGGAGC TGCCGGTCGA CGACGCCTTC GCCAAGGGCA AGGTGCTCGC CAATGGCCGC TTCGTCCACG ATCTGTATCT GTTCGAGGTC AAGGCGCCTG CGGAGTCGAA GAAGCCGTGG GACTACTACA AGCTGATTTC GACGGTCGAG GGCGACAAGG CGTTCCCGAC TGCGGCGGAG AGCGGCTGCC CGCTGACGAA GTAA
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Protein sequence | MNIKLLSAAL ASSALLAVTP ASAQGVKIGI LNDQSGVYAD YGGKWSLEAA KMAIEDFGGE VLGQKVELVS ADHQNKPDTA ISIARKWYDV EGVDMITELT TSSVALAIQD LSREKKKIDI VVGAATSRIT GDACQPYGFH WAFDTHALAV GTGGALVKSG GDTWFFLTAD YAFGYALEKD TGEIVQASGG KVLGAVRHPL NSSDFSSFLL QAQSSKAKVV GLANAGLDTA NSIKQAAEFG VVAGGQKLAG LLMTLAEVHG LGLKAAQGLV LTEAYYWDRD DKSREFADRF FKRTNRMPNM IQAGTYSATL SYLKAVKAAG TKDTEAVTKK LKELPVDDAF AKGKVLANGR FVHDLYLFEV KAPAESKKPW DYYKLISTVE GDKAFPTAAE SGCPLTK
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