Gene RPD_4400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_4400 
Symbol 
ID4024925 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4868378 
End bp4869571 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content64% 
IMG OID637964609 
Productputative branched chain amino acid periplasmic binding protein of ABC transporter 
Protein accessionYP_571517 
Protein GI91978858 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATCA AACTTCTCTC CGCCGCGCTG GCGTCCAGCG CCCTGCTTGC CGTTACTCCG 
GCTTCGGCGC AAGGCGTCAA GATCGGCATC CTCAACGATC AGTCCGGCGT CTATGCCGAC
TACGGCGGCA AGTGGTCGCT CGAAGCGGCC AAGATGGCGA TTGAGGATTT CGGCGGCGAA
GTGCTCGGCC AGAAGGTCGA ACTGGTTTCC GCCGACCATC AGAACAAGCC CGACACCGCG
ATCTCGATTG CGCGCAAATG GTACGACGTC GAGGGCGTCG ACATGATCAC CGAACTGACG
ACGTCGTCGG TGGCGCTGGC GATCCAGGAC CTCTCGCGAG AAAAGAAGAA GATCGACATC
GTGGTCGGCG CCGCGACTTC GCGCATCACC GGCGACGCCT GCCAGCCCTA TGGCTTCCAC
TGGGCGTTCG ACACCCACGC GCTCGCGGTC GGCACCGGCG GCGCGCTGGT GAAGTCGGGC
GGCGACACCT GGTTCTTCCT CACCGCGGAC TACGCGTTCG GCTACGCGCT CGAGAAAGAC
ACCGGCGAAA TCGTTCAGGC CAGCGGCGGC AAGGTGCTCG GCGCGGTCCG CCATCCGCTG
AATTCCTCGG ACTTCTCCTC GTTCCTGCTG CAGGCACAAA GCTCCAAGGC GAAGGTCGTC
GGCCTCGCCA ATGCCGGCCT CGACACCGCC AATTCGATCA AGCAGGCGGC GGAATTCGGC
GTCGTCGCTG GCGGCCAGAA GCTCGCCGGC CTGCTGATGA CGCTCGCGGA AGTCCACGGC
CTCGGCCTCA AGGCGGCGCA GGGCCTGGTG CTGACCGAAG CGTATTACTG GGATCGTGAC
GACAAGTCCC GCGAGTTCGC CGATCGGTTC TTCAAGCGCA CCAACCGGAT GCCGAACATG
ATCCAGGCCG GTACCTATTC GGCGACGCTG TCCTACCTCA AGGCGGTGAA GGCGGCGGGC
ACCAAGGACA CCGAGGCGGT GACGAAGAAG CTCAAGGAGC TGCCGGTCGA CGACGCCTTC
GCCAAGGGCA AGGTGCTCGC CAATGGCCGC TTCGTCCACG ATCTGTATCT GTTCGAGGTC
AAGGCGCCTG CGGAGTCGAA GAAGCCGTGG GACTACTACA AGCTGATTTC GACGGTCGAG
GGCGACAAGG CGTTCCCGAC TGCGGCGGAG AGCGGCTGCC CGCTGACGAA GTAA
 
Protein sequence
MNIKLLSAAL ASSALLAVTP ASAQGVKIGI LNDQSGVYAD YGGKWSLEAA KMAIEDFGGE 
VLGQKVELVS ADHQNKPDTA ISIARKWYDV EGVDMITELT TSSVALAIQD LSREKKKIDI
VVGAATSRIT GDACQPYGFH WAFDTHALAV GTGGALVKSG GDTWFFLTAD YAFGYALEKD
TGEIVQASGG KVLGAVRHPL NSSDFSSFLL QAQSSKAKVV GLANAGLDTA NSIKQAAEFG
VVAGGQKLAG LLMTLAEVHG LGLKAAQGLV LTEAYYWDRD DKSREFADRF FKRTNRMPNM
IQAGTYSATL SYLKAVKAAG TKDTEAVTKK LKELPVDDAF AKGKVLANGR FVHDLYLFEV
KAPAESKKPW DYYKLISTVE GDKAFPTAAE SGCPLTK