Gene Rpal_0486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0486 
Symbol 
ID6408135 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp524648 
End bp525853 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content63% 
IMG OID642710398 
Productsubstrate-binding protein 
Protein accessionYP_001989521 
Protein GI192288916 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAGCCGT TCCGCACCAC TTTGCTCGCA TGTCTATCGA TCGCGGCGAT CACCGCCGCG 
CAGGCGCAAT CGCAGCCACC GCTGAAGCTC GGCGCGATCC TCGACATGTC GGGCCTCTAC
GCCGACATCA CCGGAACGGG CAGCGAGACC GCGGCCAAGA TGGCGGTGGA GGATTTCGGC
GGCACGGTGC TGGGGCGCAA GGTCGAGATC ATCGCCGCCG ACCATCTCAA CAAGGCAGAT
CTGTCCGCCA ACATCGCCCG CGACATGCTC GACAATCAGG GCGTCGAAGC GATCATCGAC
GTCGCGGCCT CGGCAACCGC GCTGGCCGCC GCCGAGATCG CCAAGGCCCG CAACAAGATC
ATCATGTTCT CCGGTCCGGG CTCGATCCGG CTCAGCAACG AAGCCTGCGG CCCCTATACC
GTGCACTACG TGTTCGACAC CTTCGCGCAA GCCAACACCA CCGGCCTTGC CGCGGTGAAG
CAAGGGCTCG ACACCTGGTT CTTCCTGTCG GCCGACTATG CGTTCGGCCA AGACCTCGAG
CGCGACACCA CCAATGTCAT CAAGGCGTCG GGCGGCAAGG TGCTGGGCAG CGTCAAGCAT
CCGCTCAACA CCTCCGACTT CTCCTCGTTC CTGCTGCAGG CGCAAAGCTC GAAGGCCAAG
GTGATCGGCC TCGCCAACGC CGGCGGCGAC ACCATCAACG CGATCAAGCA GGGCGCCGAA
TTCGGCATCA CCAAAGGCGG CCAGAAGATC TCGCCGCTGC TTGCCTTCAT CTCCGACATC
GACAGCGTCG GGCTGGAAAC CGCACAGGGT CTGATCCTGG CCGAAGCGTT CTATTGGGAT
CTCAACGACG AGACCCGCGC GTTCTCCAAG CGGTTCATGG AGCGCACCAA GCGGATGCCG
ACCTCGGCGC AGGCGGGCCT GTACTCCGAA ACGATGCACT ACCTACAGGC GGTCAAGGCG
GCCGGCACCA CCGATGCGGC CGCGGTGACC AAGAAGATGA AGGAAATGCC GATCAACGAC
TTCTTCGCCA AGAACGGCAA GATCCGTGAG GATGGCCGGA TGGTGCACGA CATGTACCTG
TTCGAGGTCA AGAAGCCATC GGAGTCGAAG GGCCGCTGGG ACTATTACAA GCTGCTCGCG
ACCGTTCCTG GCGATCAGGC ATTCCAGTCG CTCGCCGACT CGCGCTGCCC GCTGGTGAAG
AAGTAA
 
Protein sequence
MKPFRTTLLA CLSIAAITAA QAQSQPPLKL GAILDMSGLY ADITGTGSET AAKMAVEDFG 
GTVLGRKVEI IAADHLNKAD LSANIARDML DNQGVEAIID VAASATALAA AEIAKARNKI
IMFSGPGSIR LSNEACGPYT VHYVFDTFAQ ANTTGLAAVK QGLDTWFFLS ADYAFGQDLE
RDTTNVIKAS GGKVLGSVKH PLNTSDFSSF LLQAQSSKAK VIGLANAGGD TINAIKQGAE
FGITKGGQKI SPLLAFISDI DSVGLETAQG LILAEAFYWD LNDETRAFSK RFMERTKRMP
TSAQAGLYSE TMHYLQAVKA AGTTDAAAVT KKMKEMPIND FFAKNGKIRE DGRMVHDMYL
FEVKKPSESK GRWDYYKLLA TVPGDQAFQS LADSRCPLVK K