Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0486 |
Symbol | |
ID | 6408135 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 524648 |
End bp | 525853 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642710398 |
Product | substrate-binding protein |
Protein accession | YP_001989521 |
Protein GI | 192288916 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAGCCGT TCCGCACCAC TTTGCTCGCA TGTCTATCGA TCGCGGCGAT CACCGCCGCG CAGGCGCAAT CGCAGCCACC GCTGAAGCTC GGCGCGATCC TCGACATGTC GGGCCTCTAC GCCGACATCA CCGGAACGGG CAGCGAGACC GCGGCCAAGA TGGCGGTGGA GGATTTCGGC GGCACGGTGC TGGGGCGCAA GGTCGAGATC ATCGCCGCCG ACCATCTCAA CAAGGCAGAT CTGTCCGCCA ACATCGCCCG CGACATGCTC GACAATCAGG GCGTCGAAGC GATCATCGAC GTCGCGGCCT CGGCAACCGC GCTGGCCGCC GCCGAGATCG CCAAGGCCCG CAACAAGATC ATCATGTTCT CCGGTCCGGG CTCGATCCGG CTCAGCAACG AAGCCTGCGG CCCCTATACC GTGCACTACG TGTTCGACAC CTTCGCGCAA GCCAACACCA CCGGCCTTGC CGCGGTGAAG CAAGGGCTCG ACACCTGGTT CTTCCTGTCG GCCGACTATG CGTTCGGCCA AGACCTCGAG CGCGACACCA CCAATGTCAT CAAGGCGTCG GGCGGCAAGG TGCTGGGCAG CGTCAAGCAT CCGCTCAACA CCTCCGACTT CTCCTCGTTC CTGCTGCAGG CGCAAAGCTC GAAGGCCAAG GTGATCGGCC TCGCCAACGC CGGCGGCGAC ACCATCAACG CGATCAAGCA GGGCGCCGAA TTCGGCATCA CCAAAGGCGG CCAGAAGATC TCGCCGCTGC TTGCCTTCAT CTCCGACATC GACAGCGTCG GGCTGGAAAC CGCACAGGGT CTGATCCTGG CCGAAGCGTT CTATTGGGAT CTCAACGACG AGACCCGCGC GTTCTCCAAG CGGTTCATGG AGCGCACCAA GCGGATGCCG ACCTCGGCGC AGGCGGGCCT GTACTCCGAA ACGATGCACT ACCTACAGGC GGTCAAGGCG GCCGGCACCA CCGATGCGGC CGCGGTGACC AAGAAGATGA AGGAAATGCC GATCAACGAC TTCTTCGCCA AGAACGGCAA GATCCGTGAG GATGGCCGGA TGGTGCACGA CATGTACCTG TTCGAGGTCA AGAAGCCATC GGAGTCGAAG GGCCGCTGGG ACTATTACAA GCTGCTCGCG ACCGTTCCTG GCGATCAGGC ATTCCAGTCG CTCGCCGACT CGCGCTGCCC GCTGGTGAAG AAGTAA
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Protein sequence | MKPFRTTLLA CLSIAAITAA QAQSQPPLKL GAILDMSGLY ADITGTGSET AAKMAVEDFG GTVLGRKVEI IAADHLNKAD LSANIARDML DNQGVEAIID VAASATALAA AEIAKARNKI IMFSGPGSIR LSNEACGPYT VHYVFDTFAQ ANTTGLAAVK QGLDTWFFLS ADYAFGQDLE RDTTNVIKAS GGKVLGSVKH PLNTSDFSSF LLQAQSSKAK VIGLANAGGD TINAIKQGAE FGITKGGQKI SPLLAFISDI DSVGLETAQG LILAEAFYWD LNDETRAFSK RFMERTKRMP TSAQAGLYSE TMHYLQAVKA AGTTDAAAVT KKMKEMPIND FFAKNGKIRE DGRMVHDMYL FEVKKPSESK GRWDYYKLLA TVPGDQAFQS LADSRCPLVK K
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