Gene RSc3342 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc3342 
Symbol 
ID1222206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp3602377 
End bp3603585 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content65% 
IMG OID637239759 
Productputative substrate-binding periplasmic (PBP) ABC transporter protein 
Protein accessionNP_521461 
Protein GI17548059 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACTCA AGAAGCTGGC TGGTGCACTG ATGGCGGCAG GACTGGGCCT TGCGGCATCC 
GGCGCGCATG CCCAGGTCTC GGGCGACAAG GTGAAGATCG GCTACATCAC CGATCTCTCC
GGCCTGTATG CCGACATCGA CGGGCAGGGC GGCGTCGAGG CGGTCAAGAT GGCGATCGAG
GATGAGGGTG GCAAGGTGCT CGGCAAGCCG ATCGAACTGG TCACGGCCGA CCACCAGAAC
AAGGCCGACA TCGCCGCCTC CAAGGCCCGC GAGTGGATGG ACCAGCAAGG CCTGGACATG
CTGGTGGGCG GCACCAACTC GGCCACCTCG CTGGCGATGA GCAAGGTGGC GGCGGAGAAG
AAGCGCGTCT TCATCGGCAT CGGCGCCGGC ACGGCCCGCC TGACCAACGA GGAGTGCACG
CCGTACACCA TCCACTACGC GTACGACACG GTGGCGCTGG CCAAGGGCAC CGGCAGCGCG
GTGGTCAAGC AGGGCGGCAA GTCGTGGTTC TTCCTGACCG CCGACTACGC CTTCGGCCAT
TCGCTGGAGA ACGATACCGC CGCTGTGGTC AAGGCCAACG GCGGCACGGT GGTGGGCTCG
GTCAAGCATC CGCTGTCGGC CTCGGACTTC TCGTCGTACC TGCTGCAGGC GCAGGCGTCC
AAGGCGCAGA TCCTGGGGCT GGCCAACGCG GGTGGCGACA CCATCAACTC GATCAAGGCG
GCCAAGGAGT TCGGCATCAC CAAGACGATG AAGATCGCCG GCCTGCTGAT GTTCATCAAC
GACGTGCACA GCCTCGGCCT GCAGACCGCC GAGGGCCTGC TGATGACCGA CAGCTGGTAC
TGGGACATGA ACGACGCCAC CCGCAAGTTC GCCACCCGGT ACTTCTCCAA GATGAAGAAG
ATGCCGAGCA GCCTGCAGGC CGCCGACTAC TCGGCCGTGT CGAACTACAT CAAGGCGGTG
GCCGCGGCCG GCACGGATGA CCCGGACAAG GTGATCGCGC AGTTGAAGAA GACGCAGCTC
AACGACTTCT TCTCCAAGGG CACGATCCGC GCCGACGGCC GCTATGTCCA CGACATGTAC
CTGATGCAGG TGAAGACCCC GGCCGAGTCG AAGAAGCCGT GGGACTACAT GAAGATCGTG
GCGACCATTC CGGGCGACCA GGCATTCACC ACGCCGGCCG AGTCGAAGTG CCCGCTGCTC
AAGAAGTAA
 
Protein sequence
MTLKKLAGAL MAAGLGLAAS GAHAQVSGDK VKIGYITDLS GLYADIDGQG GVEAVKMAIE 
DEGGKVLGKP IELVTADHQN KADIAASKAR EWMDQQGLDM LVGGTNSATS LAMSKVAAEK
KRVFIGIGAG TARLTNEECT PYTIHYAYDT VALAKGTGSA VVKQGGKSWF FLTADYAFGH
SLENDTAAVV KANGGTVVGS VKHPLSASDF SSYLLQAQAS KAQILGLANA GGDTINSIKA
AKEFGITKTM KIAGLLMFIN DVHSLGLQTA EGLLMTDSWY WDMNDATRKF ATRYFSKMKK
MPSSLQAADY SAVSNYIKAV AAAGTDDPDK VIAQLKKTQL NDFFSKGTIR ADGRYVHDMY
LMQVKTPAES KKPWDYMKIV ATIPGDQAFT TPAESKCPLL KK