Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3342 |
Symbol | |
ID | 1222206 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 3602377 |
End bp | 3603585 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637239759 |
Product | putative substrate-binding periplasmic (PBP) ABC transporter protein |
Protein accession | NP_521461 |
Protein GI | 17548059 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACTCA AGAAGCTGGC TGGTGCACTG ATGGCGGCAG GACTGGGCCT TGCGGCATCC GGCGCGCATG CCCAGGTCTC GGGCGACAAG GTGAAGATCG GCTACATCAC CGATCTCTCC GGCCTGTATG CCGACATCGA CGGGCAGGGC GGCGTCGAGG CGGTCAAGAT GGCGATCGAG GATGAGGGTG GCAAGGTGCT CGGCAAGCCG ATCGAACTGG TCACGGCCGA CCACCAGAAC AAGGCCGACA TCGCCGCCTC CAAGGCCCGC GAGTGGATGG ACCAGCAAGG CCTGGACATG CTGGTGGGCG GCACCAACTC GGCCACCTCG CTGGCGATGA GCAAGGTGGC GGCGGAGAAG AAGCGCGTCT TCATCGGCAT CGGCGCCGGC ACGGCCCGCC TGACCAACGA GGAGTGCACG CCGTACACCA TCCACTACGC GTACGACACG GTGGCGCTGG CCAAGGGCAC CGGCAGCGCG GTGGTCAAGC AGGGCGGCAA GTCGTGGTTC TTCCTGACCG CCGACTACGC CTTCGGCCAT TCGCTGGAGA ACGATACCGC CGCTGTGGTC AAGGCCAACG GCGGCACGGT GGTGGGCTCG GTCAAGCATC CGCTGTCGGC CTCGGACTTC TCGTCGTACC TGCTGCAGGC GCAGGCGTCC AAGGCGCAGA TCCTGGGGCT GGCCAACGCG GGTGGCGACA CCATCAACTC GATCAAGGCG GCCAAGGAGT TCGGCATCAC CAAGACGATG AAGATCGCCG GCCTGCTGAT GTTCATCAAC GACGTGCACA GCCTCGGCCT GCAGACCGCC GAGGGCCTGC TGATGACCGA CAGCTGGTAC TGGGACATGA ACGACGCCAC CCGCAAGTTC GCCACCCGGT ACTTCTCCAA GATGAAGAAG ATGCCGAGCA GCCTGCAGGC CGCCGACTAC TCGGCCGTGT CGAACTACAT CAAGGCGGTG GCCGCGGCCG GCACGGATGA CCCGGACAAG GTGATCGCGC AGTTGAAGAA GACGCAGCTC AACGACTTCT TCTCCAAGGG CACGATCCGC GCCGACGGCC GCTATGTCCA CGACATGTAC CTGATGCAGG TGAAGACCCC GGCCGAGTCG AAGAAGCCGT GGGACTACAT GAAGATCGTG GCGACCATTC CGGGCGACCA GGCATTCACC ACGCCGGCCG AGTCGAAGTG CCCGCTGCTC AAGAAGTAA
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Protein sequence | MTLKKLAGAL MAAGLGLAAS GAHAQVSGDK VKIGYITDLS GLYADIDGQG GVEAVKMAIE DEGGKVLGKP IELVTADHQN KADIAASKAR EWMDQQGLDM LVGGTNSATS LAMSKVAAEK KRVFIGIGAG TARLTNEECT PYTIHYAYDT VALAKGTGSA VVKQGGKSWF FLTADYAFGH SLENDTAAVV KANGGTVVGS VKHPLSASDF SSYLLQAQAS KAQILGLANA GGDTINSIKA AKEFGITKTM KIAGLLMFIN DVHSLGLQTA EGLLMTDSWY WDMNDATRKF ATRYFSKMKK MPSSLQAADY SAVSNYIKAV AAAGTDDPDK VIAQLKKTQL NDFFSKGTIR ADGRYVHDMY LMQVKTPAES KKPWDYMKIV ATIPGDQAFT TPAESKCPLL KK
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