More than 300 homologs were found in PanDaTox collection
for query gene BBta_3757 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_3757  ABC transporter substrate-binding protein  100 
 
 
409 aa  834    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_2953  ABC transporter substrate-binding protein  76.77 
 
 
408 aa  617  1e-176  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.137688  normal 
 
 
-
 
NC_007964  Nham_1674  ABC transporter substrate-binding protein  71.64 
 
 
409 aa  607  9.999999999999999e-173  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2450  urea/short-chain binding protein of ABC transporter  68.99 
 
 
408 aa  567  1e-160  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.045034  normal  0.258523 
 
 
-
 
NC_007958  RPD_2999  putative urea/short-chain binding protein of ABC transporter  68.41 
 
 
408 aa  566  1e-160  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0873398  normal  0.403324 
 
 
-
 
NC_011004  Rpal_3503  putative ABC transporter, substrate binding protein  69.09 
 
 
408 aa  563  1.0000000000000001e-159  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.10294  n/a   
 
 
-
 
NC_009485  BBta_3779  putative ABC transporter, substrate binding protein  67.59 
 
 
408 aa  557  1e-157  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1437  extracellular ligand-binding receptor  64.07 
 
 
401 aa  514  1.0000000000000001e-145  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.694305 
 
 
-
 
NC_009720  Xaut_1578  ABC transporter substrate-binding protein  62.65 
 
 
402 aa  515  1.0000000000000001e-145  Xanthobacter autotrophicus Py2  Bacteria  normal  0.803505  normal 
 
 
-
 
NC_011894  Mnod_2526  ABC transporter substrate-binding protein  62.01 
 
 
411 aa  508  1e-143  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.779779  n/a   
 
 
-
 
NC_010511  M446_5530  putative ABC branched-chain amino transporter, periplasmic binding protein  60.8 
 
 
401 aa  501  1e-140  Methylobacterium sp. 4-46  Bacteria  normal  0.460998  normal 
 
 
-
 
NC_010505  Mrad2831_0057  extracellular ligand-binding receptor  59.65 
 
 
405 aa  491  9.999999999999999e-139  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.652717  normal 
 
 
-
 
NC_010511  M446_3244  extracellular ligand-binding receptor  64.55 
 
 
401 aa  490  1e-137  Methylobacterium sp. 4-46  Bacteria  normal  0.114685  normal  0.545433 
 
 
-
 
NC_011894  Mnod_4450  Extracellular ligand-binding receptor  64.55 
 
 
401 aa  491  1e-137  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.378958  n/a   
 
 
-
 
NC_011894  Mnod_3119  Extracellular ligand-binding receptor  58.96 
 
 
403 aa  486  1e-136  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.741733  n/a   
 
 
-
 
NC_010505  Mrad2831_1936  extracellular ligand-binding receptor  58.52 
 
 
409 aa  484  1e-135  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0141282 
 
 
-
 
NC_009717  Xaut_5024  extracellular ligand-binding receptor  58.72 
 
 
400 aa  477  1e-133  Xanthobacter autotrophicus Py2  Bacteria  normal  0.151241  normal 
 
 
-
 
NC_010511  M446_5073  putative substrate-binding protein  55.69 
 
 
410 aa  472  1e-132  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.210468 
 
 
-
 
NC_007336  Reut_C6432  extracellular ligand-binding receptor  58.01 
 
 
407 aa  468  1.0000000000000001e-131  Ralstonia eutropha JMP134  Bacteria  hitchhiker  0.00470186  n/a   
 
 
-
 
NC_011894  Mnod_0807  extracellular ligand-binding receptor  55.45 
 
 
402 aa  468  9.999999999999999e-131  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.329195  n/a   
 
 
-
 
NC_009720  Xaut_3348  extracellular ligand-binding receptor  57.89 
 
 
403 aa  467  9.999999999999999e-131  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.164921 
 
 
-
 
NC_010505  Mrad2831_4022  extracellular ligand-binding receptor  56.19 
 
 
404 aa  468  9.999999999999999e-131  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.339015  normal  0.405471 
 
 
-
 
NC_009485  BBta_6215  putative ABC branched-chain amino transporter, periplasmic binding protein  58.16 
 
 
403 aa  462  1e-129  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.947625  normal 
 
 
-
 
NC_009720  Xaut_3229  putative ABC branched-chain amino transporter, periplasmic binding protein  59.05 
 
 
412 aa  458  9.999999999999999e-129  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4449  Extracellular ligand-binding receptor  56.38 
 
 
416 aa  457  1e-127  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.29774  n/a   
 
 
-
 
NC_010511  M446_1336  extracellular ligand-binding receptor  56.4 
 
 
400 aa  452  1.0000000000000001e-126  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.116449 
 
 
-
 
NC_011894  Mnod_3282  Extracellular ligand-binding receptor  56.76 
 
 
408 aa  454  1.0000000000000001e-126  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0100489  n/a   
 
 
-
 
NC_010505  Mrad2831_3789  Leu/Ile/Val-binding family protein  56 
 
 
409 aa  449  1e-125  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.710609 
 
 
-
 
NC_011894  Mnod_3279  Extracellular ligand-binding receptor  56.65 
 
 
400 aa  448  1e-125  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.463071  n/a   
 
 
-
 
NC_009485  BBta_0682  putative branched chain amino acid binding protein  54.93 
 
 
395 aa  439  9.999999999999999e-123  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.246685  normal  0.442954 
 
 
-
 
NC_010511  M446_1339  ABC transporter substrate binding protein  55.05 
 
 
412 aa  439  9.999999999999999e-123  Methylobacterium sp. 4-46  Bacteria  normal  0.358784  normal  0.213428 
 
 
-
 
NC_007778  RPB_3199  extracellular ligand-binding receptor  52.45 
 
 
405 aa  436  1e-121  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.206752  normal  0.636131 
 
 
-
 
NC_007778  RPB_4690  extracellular ligand-binding receptor  56.53 
 
 
397 aa  436  1e-121  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0709  Leu/Ile/Val-binding family protein  54.99 
 
 
406 aa  432  1e-120  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.195015  n/a   
 
 
-
 
NC_010511  M446_1790  Leu/Ile/Val-binding family protein  55.12 
 
 
417 aa  433  1e-120  Methylobacterium sp. 4-46  Bacteria  normal  0.322977  normal  0.0207356 
 
 
-
 
NC_007925  RPC_0074  putative branched chain amino acid periplasmic binding protein of ABC transporter  55.16 
 
 
399 aa  434  1e-120  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0894  putative branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  54.01 
 
 
401 aa  432  1e-120  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6461  Extracellular ligand-binding receptor  52.09 
 
 
402 aa  433  1e-120  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_5300  putative periplasmic substrate binding protein  56.88 
 
 
397 aa  432  1e-120  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.401613  n/a   
 
 
-
 
NC_007973  Rmet_1640  putative UreA/short-chain amide ABC transporter  55.76 
 
 
412 aa  432  1e-120  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000640664  normal 
 
 
-
 
NC_004311  BRA0953  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative  53.75 
 
 
401 aa  430  1e-119  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2487  Extracellular ligand-binding receptor  54.38 
 
 
404 aa  429  1e-119  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.589907  n/a   
 
 
-
 
NC_007958  RPD_2256  extracellular ligand-binding receptor  53.45 
 
 
403 aa  431  1e-119  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.777349  normal  0.277076 
 
 
-
 
NC_011662  Tmz1t_1377  ABC transporter substrate-binding protein  52.43 
 
 
404 aa  428  1e-119  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_7057  Extracellular ligand-binding receptor  51.19 
 
 
420 aa  429  1e-119  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2864  putative periplasmic binding ABC transporter protein  52.71 
 
 
401 aa  427  1e-118  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.581336 
 
 
-
 
NC_010511  M446_6250  ABC transporter substrate-binding protein  53.68 
 
 
413 aa  425  1e-118  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0435582 
 
 
-
 
NC_009720  Xaut_4079  ABC-type branched-chain amino acid transport system, periplasmic component  52.89 
 
 
405 aa  427  1e-118  Xanthobacter autotrophicus Py2  Bacteria  normal  0.23084  normal 
 
 
-
 
NC_010524  Lcho_3593  putative ABC transporter substrate binding protein  54.29 
 
 
403 aa  424  1e-117  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.636574 
 
 
-
 
NC_007958  RPD_4400  putative branched chain amino acid periplasmic binding protein of ABC transporter  55.06 
 
 
397 aa  423  1e-117  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5091  putative branched-chain amino acid ABC transporter, substrate-binding protein  54.11 
 
 
416 aa  422  1e-117  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.339692  normal  0.603773 
 
 
-
 
NC_007348  Reut_B3887  ureA/short-chain amide ABC transporter  52.85 
 
 
413 aa  419  1e-116  Ralstonia eutropha JMP134  Bacteria  normal  0.0891482  n/a   
 
 
-
 
NC_009050  Rsph17029_4029  ABC branched-chain amino acid transporter, periplasmic binding protein  53.83 
 
 
400 aa  418  1e-116  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0275  putative ureA/short-chain amide ABC transporter  54.25 
 
 
401 aa  418  1e-116  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.325884 
 
 
-
 
NC_009485  BBta_4670  putative ABC transporter, substrate-binding protein  50.61 
 
 
403 aa  421  1e-116  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011366  Rleg2_5823  putative branched-chain amino acid ABC transporter, substrate-binding protein  51.84 
 
 
401 aa  416  9.999999999999999e-116  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.281514  normal  0.102648 
 
 
-
 
NC_007494  RSP_3297  ABC branched-chain amino acid transporter, periplasmic binding protein  53.56 
 
 
400 aa  415  9.999999999999999e-116  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.300791  n/a   
 
 
-
 
NC_009667  Oant_1402  branched-chain amino acid ABC transporter, periplasmic amino acid- binding protein  52.45 
 
 
401 aa  417  9.999999999999999e-116  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6729  Extracellular ligand-binding receptor  52.33 
 
 
401 aa  416  9.999999999999999e-116  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7539  putative ABC transporter (substrate binding protein)  53.52 
 
 
394 aa  415  9.999999999999999e-116  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3421  ABC transporter substrate-binding protein  49.64 
 
 
406 aa  417  9.999999999999999e-116  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2694  putative substrate-binding protein  48.18 
 
 
414 aa  413  1e-114  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.121635 
 
 
-
 
NC_007778  RPB_0554  ureA/short-chain amide ABC transporter  56.08 
 
 
402 aa  412  1e-114  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.930825  normal  0.0786148 
 
 
-
 
NC_011004  Rpal_0486  substrate-binding protein  55.29 
 
 
401 aa  411  1e-114  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5117  putative UreA/short-chain amide ABC transporter  54.86 
 
 
404 aa  408  1e-113  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_1717  ABC branched-chain amino acid transporter, periplasmic binding protein  52 
 
 
399 aa  409  1e-113  Paracoccus denitrificans PD1222  Bacteria  normal  0.620152  normal 
 
 
-
 
NC_007347  Reut_A3369  extracellular ligand-binding receptor  52.49 
 
 
402 aa  407  1.0000000000000001e-112  Ralstonia eutropha JMP134  Bacteria  normal  0.998438  n/a   
 
 
-
 
NC_007778  RPB_3615  urea/short-chain binding protein of ABC transporter  51.85 
 
 
404 aa  407  1.0000000000000001e-112  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.489489  normal  0.574773 
 
 
-
 
NC_009429  Rsph17025_3292  hypothetical protein  52.77 
 
 
400 aa  407  1.0000000000000001e-112  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.406168  normal 
 
 
-
 
NC_010505  Mrad2831_0329  putative ABC transport protein substrate-binding component  52.86 
 
 
405 aa  407  1.0000000000000001e-112  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.42175  normal 
 
 
-
 
NC_009484  Acry_2930  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  51.05 
 
 
411 aa  406  1.0000000000000001e-112  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_3518  extracellular ligand-binding receptor  52.24 
 
 
402 aa  407  1.0000000000000001e-112  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.36456 
 
 
-
 
NC_009720  Xaut_1298  putative ABC branched-chain amino transporter, periplasmic binding protein  51.97 
 
 
419 aa  403  1e-111  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3122  Extracellular ligand-binding receptor  49.76 
 
 
419 aa  403  1e-111  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0659  putative substrate-binding protein  50.77 
 
 
412 aa  402  1e-111  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2079  branched chain amino acid transport system substrate binding protein  51.06 
 
 
404 aa  401  1e-111  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc3342  putative substrate-binding periplasmic (PBP) ABC transporter protein  50.98 
 
 
402 aa  400  9.999999999999999e-111  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_3211  Extracellular ligand-binding receptor  50.74 
 
 
402 aa  400  9.999999999999999e-111  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2726  substrate-binding protein  47.06 
 
 
412 aa  399  9.999999999999999e-111  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.913587  n/a   
 
 
-
 
NC_007643  Rru_A3303  amide-urea binding protein  49.75 
 
 
404 aa  400  9.999999999999999e-111  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.219547  n/a   
 
 
-
 
NC_007651  BTH_I3329  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  50.74 
 
 
398 aa  399  9.999999999999999e-111  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_3537  putative substrate-binding periplasmic (PBP) ABC transporter protein  50.49 
 
 
402 aa  398  9.999999999999999e-111  Ralstonia pickettii 12J  Bacteria  normal  0.277166  normal  0.0827229 
 
 
-
 
NC_008786  Veis_4075  ABC-type transporter, periplasmic component  51.82 
 
 
404 aa  401  9.999999999999999e-111  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.624367 
 
 
-
 
NC_010623  Bphy_4932  extracellular ligand-binding receptor  51.31 
 
 
409 aa  397  1e-109  Burkholderia phymatum STM815  Bacteria  normal  0.350034  normal 
 
 
-
 
NC_011992  Dtpsy_2466  Extracellular ligand-binding receptor  53.65 
 
 
400 aa  395  1e-109  Acidovorax ebreus TPSY  Bacteria  normal  0.469696  n/a   
 
 
-
 
NC_010511  M446_3023  putative UreA/short-chain amide ABC transporter  55.12 
 
 
406 aa  397  1e-109  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.040363 
 
 
-
 
NC_008752  Aave_1283  putative substrate-binding periplasmic (pbp) ABC transporter protein  52.63 
 
 
401 aa  395  1e-109  Acidovorax citrulli AAC00-1  Bacteria  normal  0.154147  normal 
 
 
-
 
NC_006348  BMA2936  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  52.08 
 
 
398 aa  392  1e-108  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0198  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  52.08 
 
 
398 aa  393  1e-108  Burkholderia pseudomallei 1710b  Bacteria  normal  0.352006  n/a   
 
 
-
 
NC_009074  BURPS668_3991  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  52.08 
 
 
398 aa  393  1e-108  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3375  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  52.08 
 
 
398 aa  392  1e-108  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3120  putative substrate-binding periplasmic (pbp) ABC transporter protein  53.39 
 
 
400 aa  393  1e-108  Acidovorax sp. JS42  Bacteria  normal  0.347887  normal 
 
 
-
 
NC_008836  BMA10229_A1607  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  52.08 
 
 
392 aa  392  1e-108  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1254  ABC-type branched-chain amino acid transport systems, periplasmic component  50.65 
 
 
427 aa  392  1e-108  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.946675 
 
 
-
 
NC_009076  BURPS1106A_4065  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  52.08 
 
 
398 aa  393  1e-108  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_0008  Extracellular ligand-binding receptor  49.75 
 
 
408 aa  394  1e-108  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0278078 
 
 
-
 
NC_012791  Vapar_3485  Extracellular ligand-binding receptor  52.94 
 
 
398 aa  395  1e-108  Variovorax paradoxus S110  Bacteria  normal  0.381916  n/a   
 
 
-
 
NC_009485  BBta_0731  hypothetical protein  49.88 
 
 
405 aa  392  1e-108  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.183807  normal 
 
 
-
 
NC_007778  RPB_1152  UreA/short-chain amide ABC transporter  49.23 
 
 
415 aa  390  1e-107  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.471291  normal  0.323569 
 
 
-
 
NC_008542  Bcen2424_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  52.91 
 
 
399 aa  391  1e-107  Burkholderia cenocepacia HI2424  Bacteria  normal  0.782241  n/a   
 
 
-
 
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