| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5300 |
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| Symbol | |
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| ID | 6413001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5719391 |
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| End bp | 5720584 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642715189 |
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| Product | putative periplasmic substrate binding protein |
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| Protein accession | YP_001994261 |
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| Protein GI | 192293656 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.401613 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTCA AACTTCTTTC CGCCGCGCTT GCGGCTACTG CCCTCGTTGC CATCACGCCG
GCTTCGGCGC AGGGCGTCAA GATCGGCATC CTCAACGACC AGTCCGGCGT GTACGCGGAC
TACGGCGGCA AGTGGTCGCT CGAAGCCGCC AAGATGGCGG TGGAGGATTT CGGCGGCGAA
GTGCTGGGGC AGAAGATCGA ACTCATCTCG GCCGATCATC AGAACAAGCC CGACAACGCG
GTCGCGATCG CGCGCAAGTG GTACGACGTC GACGGCGTCG ACATGATTAC CGAACTCACC
ACCTCGTCGG TGGCGCTGGC GATCCAGGAT CTGTCGAAGG AAAAGAAGAA GATCGATATC
GTGGTCGGCG CCGCGACCTC GCGGATCACC GGCGATGCCT GCCAGCCTTA CGGGTTCCAT
TGGGCGTTCG ATACTCATGC CCTCGCGGTC GGAACCGGCG GCGCCCTGGT GAAGGCCGGC
GGCGACACCT GGTTCTTCCT GACCGCGGAC TACGCGTTCG GCTACGCGCT GGAGAAGGAC
ACCAGTGAGG TCGTGCTAGC CAGCGGCGGC AAGGTGCTCG GCTCGGTACG GCATCCGCTG
AATTCGTCGG ACTTCTCCTC GTTCCTGCTG CAGGCGCAGG CCTCGAAGGC CAAGGTCGTC
GGCCTTGCCA ATGCCGGCCT CGACACCGCC AACTCGATCA AGCAGGCCTC TGAATTCGGC
ATCGTCGCCG GCGGCCAGAA GCTTGCGGGC CTCTTGATGA CGCTGGCCGA AGTGAACGGT
CTCGGCCTCA AGGCGGCGCA GGGCTTGGTG CTGACCGAAG CCTATTATTG GGATCGCGAC
GACAAATCGC GTGAGTTCGC CGAGCGTTTC TTCAAGCGCA CCAGCCGGAT GCCGAGCATG
ATCCAGGCCG GGACCTATTC GGCGACGCTG TCCTATTTGA AGGCCGTCAA GGCCGCCGGA
ACCAAGGACA CCGATGCGGT GGCCAAGAAG CTGAAGGAGC TGCCAGTCGA CGACGCGTTT
GCATCCGGCA AGGTGCTGGC CAACGGCCGC TTCGTCCACG ACATGTATCT GTTCGAGGTG
AAGAAGCCGG AAGAATCGAA GAAGCCGTGG GATTACTACA AGCTGCTCGC CACCGTGCCG
GGCGACAAGG CGTTCCCGAC TGCGGCAGAG AGCGGCTGCC CGCTGACCAA GTAA
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| Protein sequence | MKLKLLSAAL AATALVAITP ASAQGVKIGI LNDQSGVYAD YGGKWSLEAA KMAVEDFGGE
VLGQKIELIS ADHQNKPDNA VAIARKWYDV DGVDMITELT TSSVALAIQD LSKEKKKIDI
VVGAATSRIT GDACQPYGFH WAFDTHALAV GTGGALVKAG GDTWFFLTAD YAFGYALEKD
TSEVVLASGG KVLGSVRHPL NSSDFSSFLL QAQASKAKVV GLANAGLDTA NSIKQASEFG
IVAGGQKLAG LLMTLAEVNG LGLKAAQGLV LTEAYYWDRD DKSREFAERF FKRTSRMPSM
IQAGTYSATL SYLKAVKAAG TKDTDAVAKK LKELPVDDAF ASGKVLANGR FVHDMYLFEV
KKPEESKKPW DYYKLLATVP GDKAFPTAAE SGCPLTK
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