Gene Nham_1674 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_1674 
Symbol 
ID4032927 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp1872111 
End bp1873340 
Gene Length1230 bp 
Protein Length409 aa 
Translation table11 
GC content62% 
IMG OID637970147 
ProductABC transporter substrate-binding protein 
Protein accessionYP_576951 
Protein GI92117222 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAACCA GATTAGCGGC TCTACTCGTT GGCACGGCGC TGACCTTGGG CATGACCGTC 
GGCGCGACGG CCCAGGACAA ACAGGACAAG AACGTCAAGA TCGGCGTGCT GACCGATCTT
TCCGGCCTTT ATGCAGACCT CGCCGGGGAG GGGTCGGTCG TCGCGGCGCA GATGGCGGTC
GATGATTCCG GGCTGAAGGC CAAGGGCTGG ACAATCGACG TGATCTCGGC GGATCACCAG
AACAAGCCCG ACATCGGTAC CGGCATCGCG CGCCGATGGA TCGATACCGA CAAGGTCGAC
ATTATCGCCG ATGTCCCGAA CTCCGGCGTT GCGCTCGCCG TCAACAACAT CGTCAAAGAG
AAGAACCGCA TCCTGCTCGA TTCCGGCGCC GGCTCTTCGG AGTTGACCGA CACGCAGTGC
ACGCCGAATA CGGTCCATTT CACCTACGAC ACCTACATGC TGGCTCACAG CACCGGCAGC
GCCATGGTGA AGGCCGGCGG CGATAGCTGG TTCTTCATCA CGGCGGACTA CGCCTTCGGT
CATGCCCTCG AGAACGATAC GGCTGCGGTC GTCAAGGCCG CCGGCGGCAA GGTGCTGGGA
AGCGTCAGGG TGCCGCTAAA CACGGCCGAC TTCTCGTCAT ACCTGCTGCA GGCCCAGGCA
TCGAAGGCCA AGGTGATCGG GCTCGCCAAT GCCGGCGGGG ATACGACGAA CTCGATCAAG
CAGGCGGCGG AATTCGGCAT CGTCAAGGGC GGCCAGAAAC TAGCCGGCCT GCTGATGTTT
CTGTCGGATG TTCACTCGCT CGGCCTGAAC GTGGCGCAGG GCCTCAACCT GAGCGAGACG
TTCTACTGGA ACATGAACGA CCAGACCCGG GCCTTCTCGA AGCGCTTCAG CGAACGTCTG
AAAACCCATG CGATGCCGAC GATGGTTCAT GCCGGCGTCT ATGCGGGCCT GCTGCACTAC
CTCAAGGCGC TGGAGGCCCT CGGCGGCAAT CCGCATGACG GCGCCAAGGT GGTGGCCAAG
ATGAAGGAGA TACCAACCGA CGATCCGCTG TTCGGCAAGG GTACGATCCG GATCGACGGT
CGCGCGATTC ATCCGGCCTA CCTGTTCGAA GTCAAGACGC CTGCGGAATC GAAGGGCGAG
TGGGATCTCT ACAAGCTGGT CGGCACCACG CCCGGAGATG ATGCGTTCCG GCCGTTGTCG
GAAAGCAAGT GCCCGCTGGT CAAGCATTGA
 
Protein sequence
MRTRLAALLV GTALTLGMTV GATAQDKQDK NVKIGVLTDL SGLYADLAGE GSVVAAQMAV 
DDSGLKAKGW TIDVISADHQ NKPDIGTGIA RRWIDTDKVD IIADVPNSGV ALAVNNIVKE
KNRILLDSGA GSSELTDTQC TPNTVHFTYD TYMLAHSTGS AMVKAGGDSW FFITADYAFG
HALENDTAAV VKAAGGKVLG SVRVPLNTAD FSSYLLQAQA SKAKVIGLAN AGGDTTNSIK
QAAEFGIVKG GQKLAGLLMF LSDVHSLGLN VAQGLNLSET FYWNMNDQTR AFSKRFSERL
KTHAMPTMVH AGVYAGLLHY LKALEALGGN PHDGAKVVAK MKEIPTDDPL FGKGTIRIDG
RAIHPAYLFE VKTPAESKGE WDLYKLVGTT PGDDAFRPLS ESKCPLVKH