More than 300 homologs were found in PanDaTox collection
for query gene MADE_03374 on replicon NC_011138
Organism: Alteromonas macleodii 'Deep ecotype'



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011138  MADE_03374  Response regulator containing a CheY-like receiver domain and a GGDEF domain  100 
 
 
419 aa  865    Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.67607  n/a   
 
 
-
 
NC_009654  Mmwyl1_1933  response regulator receiver modulated diguanylate cyclase  48.77 
 
 
411 aa  399  9.999999999999999e-111  Marinomonas sp. MWYL1  Bacteria  normal  0.380329  normal 
 
 
-
 
NC_009831  Ssed_1723  diguanylate cyclase  44.98 
 
 
420 aa  337  2.9999999999999997e-91  Shewanella sediminis HAW-EB3  Bacteria  normal  0.428268  hitchhiker  0.00000158997 
 
 
-
 
NC_010506  Swoo_2855  response regulator receiver modulated diguanylate cyclase  43.13 
 
 
415 aa  323  3e-87  Shewanella woodyi ATCC 51908  Bacteria  normal  0.220747  hitchhiker  0.000676798 
 
 
-
 
NC_007912  Sde_0621  response regulator receiver modulated diguanylate cyclase  41.19 
 
 
415 aa  306  5.0000000000000004e-82  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.649156 
 
 
-
 
NC_008700  Sama_1511  response regulator receiver protein  42.82 
 
 
416 aa  300  2e-80  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2466  diguanylate cyclase  40.9 
 
 
406 aa  300  4e-80  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0503371  n/a   
 
 
-
 
NC_009439  Pmen_0478  response regulator receiver modulated diguanylate cyclase  40.59 
 
 
422 aa  298  1e-79  Pseudomonas mendocina ymp  Bacteria  normal  0.60604  normal 
 
 
-
 
NC_009901  Spea_1684  response regulator receiver modulated diguanylate cyclase  42.78 
 
 
400 aa  294  2e-78  Shewanella pealeana ATCC 700345  Bacteria  normal  0.16221  n/a   
 
 
-
 
NC_003910  CPS_0081  response regulator/GGDEF domain-containing protein  39.95 
 
 
419 aa  293  4e-78  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03265  hypothetical protein  39.56 
 
 
403 aa  285  7e-76  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007643  Rru_A0085  response regulator receiver modulated diguanylate cyclase  38.54 
 
 
453 aa  282  6.000000000000001e-75  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2518  GGDEF domain-containing protein  40.05 
 
 
407 aa  281  1e-74  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0581  response regulator  37.77 
 
 
417 aa  278  1e-73  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000040809  n/a   
 
 
-
 
NC_008228  Patl_4080  diguanylate cyclase  38.94 
 
 
418 aa  271  1e-71  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3346  response regulator/GGDEF domain-containing protein  37.07 
 
 
417 aa  271  2e-71  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2323  response regulator receiver modulated diguanylate cyclase  37.5 
 
 
445 aa  271  2e-71  Desulfovibrio vulgaris DP4  Bacteria  normal  0.123075  unclonable  0.0000172862 
 
 
-
 
NC_013512  Sdel_0659  diguanylate cyclase  35.61 
 
 
417 aa  268  1e-70  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.0149639  n/a   
 
 
-
 
NC_007575  Suden_1780  diguanylate cyclase  37.86 
 
 
414 aa  268  1e-70  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_0462  3-deoxy-d-manno-octulosonic-acid transferase  37.83 
 
 
422 aa  265  1e-69  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2407  response regulator receiver modulated diguanylate cyclase  36.06 
 
 
443 aa  261  2e-68  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0296488 
 
 
-
 
NC_010717  PXO_00466  Putative two-component system regulatory protein with GGDEF domain  35.35 
 
 
414 aa  256  4e-67  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.6149  n/a   
 
 
-
 
NC_008599  CFF8240_1193  diguanylate cyclase  35.92 
 
 
415 aa  254  2.0000000000000002e-66  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00199  response regulator/GGDEF domain protein  34.22 
 
 
426 aa  251  2e-65  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1984  threonine dehydratase  36.06 
 
 
418 aa  250  4e-65  Campylobacter concisus 13826  Bacteria  normal  0.241676  n/a   
 
 
-
 
NC_011369  Rleg2_2153  response regulator receiver modulated diguanylate cyclase  36.21 
 
 
443 aa  248  1e-64  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.257798  normal  0.276429 
 
 
-
 
NC_008789  Hhal_2233  response regulator receiver modulated diguanylate cyclase  34.79 
 
 
428 aa  247  2e-64  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1334  response regulator receiver modulated diguanylate cyclase  34.76 
 
 
447 aa  229  5e-59  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3514  response regulator receiver modulated diguanylate cyclase  35.59 
 
 
427 aa  229  1e-58  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0178  response regulator receiver domain-containing protein  42.02 
 
 
272 aa  206  5e-52  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2852  response regulator receiver protein  41.04 
 
 
268 aa  195  1e-48  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0579  response regulator receiver sensor signal transduction histidine kinase  39.64 
 
 
487 aa  191  2e-47  Desulfovibrio vulgaris DP4  Bacteria  normal  0.721447  normal 
 
 
-
 
NC_011769  DvMF_1131  response regulator receiver sensor signal transduction histidine kinase  40.96 
 
 
500 aa  189  1e-46  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011769  DvMF_1937  response regulator receiver protein  41.06 
 
 
269 aa  187  3e-46  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007519  Dde_0180  response regulator receiver domain-containing protein  39.53 
 
 
273 aa  186  6e-46  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2408  response regulator receiver protein  35.86 
 
 
276 aa  182  9.000000000000001e-45  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.10805 
 
 
-
 
NC_011369  Rleg2_2154  response regulator receiver protein  35.06 
 
 
268 aa  181  2e-44  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.193377  normal  0.527206 
 
 
-
 
NC_011989  Avi_2726  two component response regulator  36.65 
 
 
277 aa  180  4e-44  Agrobacterium vitis S4  Bacteria  normal  0.54081  n/a   
 
 
-
 
NC_003912  CJE0746  response regulator/GGDEF domain-containing protein  30.34 
 
 
414 aa  178  2e-43  Campylobacter jejuni RM1221  Bacteria  normal  0.0447686  n/a   
 
 
-
 
NC_008787  CJJ81176_0671  response regulator/GGDEF domain-containing protein  30.34 
 
 
414 aa  178  2e-43  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1795  response regulator receiver protein  36.05 
 
 
274 aa  178  2e-43  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00918371  hitchhiker  0.000651153 
 
 
-
 
NC_009707  JJD26997_1356  response regulator/GGDEF domain-containing protein  30.1 
 
 
414 aa  177  4e-43  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3271  PAS/PAC sensor hybrid histidine kinase  37.25 
 
 
1691 aa  167  4e-40  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0825  response regulator receiver modulated serine phosphatase  35.89 
 
 
526 aa  166  6.9999999999999995e-40  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.126425  normal  0.339318 
 
 
-
 
NC_002939  GSU2313  response regulator  32.89 
 
 
301 aa  149  1.0000000000000001e-34  Geobacter sulfurreducens PCA  Bacteria  normal  0.483613  n/a   
 
 
-
 
NC_009483  Gura_0195  response regulator receiver modulated diguanylate cyclase  31.15 
 
 
309 aa  147  4.0000000000000006e-34  Geobacter uraniireducens Rf4  Bacteria  normal  0.0106599  n/a   
 
 
-
 
NC_007517  Gmet_0069  response regulator receiver modulated diguanylate cyclase  33.98 
 
 
314 aa  144  3e-33  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.840661 
 
 
-
 
NC_002939  GSU3376  GGDEF/response regulator receiver domain-containing protein  31.49 
 
 
308 aa  142  8e-33  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1846  response regulator receiver modulated diguanylate cyclase  32.56 
 
 
314 aa  142  9.999999999999999e-33  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0652  two component response regulator  30.81 
 
 
414 aa  140  3.9999999999999997e-32  Campylobacter lari RM2100  Bacteria  normal  0.267728  n/a   
 
 
-
 
NC_010814  Glov_3614  response regulator receiver modulated diguanylate cyclase  31.19 
 
 
310 aa  137  4e-31  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1332  response regulator receiver modulated diguanylate cyclase  32.9 
 
 
306 aa  136  7.000000000000001e-31  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2951  response regulator receiver modulated diguanylate cyclase  31.29 
 
 
306 aa  135  9.999999999999999e-31  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007614  Nmul_A2693  diguanylate cyclase  32.77 
 
 
302 aa  134  3e-30  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3473  response regulator receiver modulated diguanylate cyclase  32.49 
 
 
351 aa  133  5e-30  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0600  response regulator receiver protein  31.25 
 
 
301 aa  133  6.999999999999999e-30  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3557  response regulator receiver modulated diguanylate cyclase  32.69 
 
 
322 aa  132  1.0000000000000001e-29  Anaeromyxobacter sp. K  Bacteria  normal  0.457648  n/a   
 
 
-
 
NC_011891  A2cp1_3625  response regulator receiver modulated diguanylate cyclase  32.26 
 
 
322 aa  129  7.000000000000001e-29  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1554  response regulator receiver modulated diguanylate cyclase  33.87 
 
 
419 aa  129  7.000000000000001e-29  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1341  response regulator receiver modulated diguanylate cyclase  32.11 
 
 
319 aa  129  1.0000000000000001e-28  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0963  response regulator receiver modulated diguanylate cyclase  32.89 
 
 
300 aa  129  1.0000000000000001e-28  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  29.41 
 
 
317 aa  127  3e-28  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1108  diguanylate cyclase  24.8 
 
 
454 aa  127  5e-28  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3505  response regulator receiver modulated diguanylate cyclase  32.65 
 
 
665 aa  126  7e-28  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  32.41 
 
 
337 aa  126  7e-28  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_010002  Daci_1192  response regulator receiver modulated diguanylate cyclase  32.43 
 
 
316 aa  126  7e-28  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0841  response regulator receiver modulated diguanylate cyclase  28.87 
 
 
715 aa  124  4e-27  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.101081  normal 
 
 
-
 
NC_008577  Shewana3_2212  response regulator receiver modulated diguanylate cyclase  27.25 
 
 
543 aa  123  5e-27  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  29.58 
 
 
314 aa  122  9.999999999999999e-27  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1348  response regulator PleD  27.13 
 
 
457 aa  122  9.999999999999999e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3131  response regulator receiver modulated diguanylate cyclase  28.14 
 
 
464 aa  121  3e-26  Jannaschia sp. CCS1  Bacteria  normal  normal  0.308445 
 
 
-
 
NC_013522  Taci_0157  response regulator receiver modulated diguanylate cyclase  29.77 
 
 
917 aa  120  4.9999999999999996e-26  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3544  response regulator receiver modulated diguanylate cyclase  30.74 
 
 
322 aa  120  6e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0106122 
 
 
-
 
NC_010506  Swoo_0828  response regulator receiver modulated diguanylate cyclase  29.9 
 
 
324 aa  120  6e-26  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3583  response regulator receiver modulated diguanylate cyclase  29.77 
 
 
322 aa  119  7e-26  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  hitchhiker  0.000864033 
 
 
-
 
NC_008789  Hhal_0365  response regulator receiver modulated diguanylate cyclase  29.63 
 
 
308 aa  119  9.999999999999999e-26  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3005  response regulator receiver modulated diguanylate cyclase  31.6 
 
 
303 aa  119  9.999999999999999e-26  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.000288968 
 
 
-
 
NC_008576  Mmc1_1484  response regulator receiver modulated diguanylate cyclase  28.04 
 
 
555 aa  119  9.999999999999999e-26  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.0158649 
 
 
-
 
NC_010002  Daci_1507  response regulator receiver modulated diguanylate cyclase  28.57 
 
 
308 aa  119  9.999999999999999e-26  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.914031 
 
 
-
 
NC_013739  Cwoe_3139  response regulator receiver modulated diguanylate cyclase  30.49 
 
 
676 aa  119  9.999999999999999e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.990746 
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  29.1 
 
 
308 aa  117  3e-25  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_0667  response regulator receiver domain-containing protein  29.82 
 
 
1526 aa  117  3e-25  Saccharophagus degradans 2-40  Bacteria  normal  0.0280955  hitchhiker  0.000000898802 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  29.1 
 
 
308 aa  117  3e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_002939  GSU1643  GGDEF/response regulator receiver domain-containing protein  31.7 
 
 
316 aa  117  3.9999999999999997e-25  Geobacter sulfurreducens PCA  Bacteria  normal  0.176359  n/a   
 
 
-
 
NC_008228  Patl_3669  diguanylate cyclase  31.31 
 
 
300 aa  117  3.9999999999999997e-25  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.0119902  n/a   
 
 
-
 
NC_008321  Shewmr4_2087  response regulator receiver modulated diguanylate cyclase  29.19 
 
 
544 aa  117  3.9999999999999997e-25  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1887  response regulator receiver modulated diguanylate cyclase  29.19 
 
 
544 aa  117  3.9999999999999997e-25  Shewanella sp. MR-7  Bacteria  normal  normal  0.374169 
 
 
-
 
NC_007348  Reut_B3647  response regulator receiver modulated diguanylate cyclase  32.97 
 
 
359 aa  117  5e-25  Ralstonia eutropha JMP134  Bacteria  normal  0.745021  n/a   
 
 
-
 
NC_013161  Cyan8802_2067  response regulator receiver modulated diguanylate cyclase  29.19 
 
 
317 aa  117  5e-25  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2041  response regulator receiver modulated diguanylate cyclase  29.19 
 
 
317 aa  117  5e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013889  TK90_1372  response regulator receiver modulated diguanylate cyclase  25.82 
 
 
436 aa  117  6e-25  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.738866  normal  0.941955 
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  29.51 
 
 
322 aa  116  6e-25  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_011145  AnaeK_2309  response regulator receiver modulated diguanylate cyclase  29.21 
 
 
434 aa  116  6.9999999999999995e-25  Anaeromyxobacter sp. K  Bacteria  normal  0.484645  n/a   
 
 
-
 
NC_009831  Ssed_1382  response regulator receiver protein  30.24 
 
 
302 aa  116  6.9999999999999995e-25  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2192  response regulator receiver modulated diguanylate cyclase  31.91 
 
 
303 aa  116  7.999999999999999e-25  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2397  response regulator receiver modulated diguanylate cyclase  29.21 
 
 
434 aa  116  7.999999999999999e-25  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.593336  n/a   
 
 
-
 
NC_007912  Sde_2383  response regulator receiver modulated diguanylate cyclase  30.26 
 
 
434 aa  116  7.999999999999999e-25  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.00665942 
 
 
-
 
NC_008740  Maqu_3442  response regulator receiver modulated diguanylate cyclase  28.2 
 
 
539 aa  116  8.999999999999998e-25  Marinobacter aquaeolei VT8  Bacteria  normal  0.677434  n/a   
 
 
-
 
NC_011831  Cagg_1830  response regulator receiver modulated diguanylate cyclase  29.17 
 
 
941 aa  115  1.0000000000000001e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_4015  response regulator receiver modulated diguanylate cyclase  31.44 
 
 
315 aa  115  1.0000000000000001e-24  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
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