Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Meso_1348 |
Symbol | pleD |
ID | 4181582 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chelativorans sp. BNC1 |
Kingdom | Bacteria |
Replicon accession | NC_008254 |
Strand | + |
Start bp | 1440155 |
End bp | 1441528 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638067237 |
Product | response regulator PleD |
Protein accession | YP_673909 |
Protein GI | 110633701 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGCCC GTATCCTTGT GGTGGATGAT GTTCCTGCCA ATCTGCGCCT GCTGGAGGCA CGGCTCCTCG CCGAATATTA CGACGTGGTG ACCGCCCGTT CGGGACCGGA CGCCATCGAT ATCTGCGAAT CAAGCAAGAT CGACGTTGTG CTCCTGGACG TGATGATGCC GGGAATGGAC GGCTTCGAGG TCTGCCGGCG CTTGAAAGCC GATCCGCTCA CGACGCATAT CCCCGTGATC ATGATCACCG CGCTCGACCA GCCGTCGGAT CGCGTCCGCG GCTTGGAGGC CGGAGCCGAT GATTTTCTGA CGAAGCCAGT CAACGACCTG CAGCTTCTGA CGCGTGTAAA GAGCCTAACC AGGCTCAAGG CATTGACGGA CGAGCTCAGG CTGCGCGCGG CTACGACGCG CAACATCGGC ATTGAGCAGC TGCTGCAGAA GAAGAGTGTC GATGACGAGG AAAAGCCTTC GGTGCTCCTC ATCGATGAGG ATAAAGCTGC CGGCAGGCAG CTTGCCAGAA TGCTGCAGGA TCATTTTGCG CTGGATGCCG TCGACGACCC GCAGGAAGGC TTGGTTCGCG CCGCCGAAAG GTCTTACGAG TGCATCATCG TATCGAGCAG CTTTGTTGCC TATGACCCGC TGCGGCTGTG CTCGCAGCTA AGGGCGATGG ACCGCACGCG GCTCGTTCCC ATCATCCTCT TTGCGGGCGA GGGCGATGAG ACAGTGATCA TTCGCGGGCT CGAACTGGCG GTGAATGATT ATGTGCTGCG CCCGGTGGAA CGGCAGGAAC TGATCGCGCG GCTGCGCACG CAGATCCGCC GCAAGCGATA CAATGACAGC CTGCGCTCCA GTGTCGCCCA GACTGTGGAA ATGGCGATCA CCGATCCGCT GACCGGCCTT CATAACCGGC GGTATCTTGA TAGTCACCTT CAGAGCCTTT TCGACCGCGC GGAGGCCAGG CGCCGTCCGC TTTCGGTCAT GATCGTCGAT ATCGACCGCT TCAAGTCAAT CAACGACACC TACGGACATG ATGGCGGTGA CGCGGTATTG CGCGCGGTGG CCGCGCGGCT GCGCCGGAGC CTGCGTGGGA TCGATCTCGT GTGCCGTTAC GGCGGTGAAG AATTCGTGGT TGTGATGCCG GAAACGGAAC TTTCGATCGC AGAGCGCGTC GGCGAGCGCA TCAGGCAGCA GATCGCCGAA GGCGCTTTTT TGCTGGGCGA TTCAGCCGGT GCCATTTCTG TCACGGTCAG CATAGGGGTG GCGGCGCTTC TCCAGCCGCA GGATACCGTG GAGGCGCTGA TGAAGCGCGC TGATATGGCG CTTTATGAGG CGAAGTCGAG CGGTCGCAAT CGGGTGGTCG CACCGGCTGC CTGA
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Protein sequence | MTARILVVDD VPANLRLLEA RLLAEYYDVV TARSGPDAID ICESSKIDVV LLDVMMPGMD GFEVCRRLKA DPLTTHIPVI MITALDQPSD RVRGLEAGAD DFLTKPVNDL QLLTRVKSLT RLKALTDELR LRAATTRNIG IEQLLQKKSV DDEEKPSVLL IDEDKAAGRQ LARMLQDHFA LDAVDDPQEG LVRAAERSYE CIIVSSSFVA YDPLRLCSQL RAMDRTRLVP IILFAGEGDE TVIIRGLELA VNDYVLRPVE RQELIARLRT QIRRKRYNDS LRSSVAQTVE MAITDPLTGL HNRRYLDSHL QSLFDRAEAR RRPLSVMIVD IDRFKSINDT YGHDGGDAVL RAVAARLRRS LRGIDLVCRY GGEEFVVVMP ETELSIAERV GERIRQQIAE GAFLLGDSAG AISVTVSIGV AALLQPQDTV EALMKRADMA LYEAKSSGRN RVVAPAA
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