| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_03265 |
|---|
| Symbol | |
|---|
| ID | 5554630 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | + |
|---|
| Start bp | 3290174 |
|---|
| End bp | 3291385 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640908746 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001446440 |
|---|
| Protein GI | 156975533 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGTAACA AAATACTGGT CGTCGAAGAC AGCCGTGCCT TTAAAAACTA CTTACAACAG
CTGTTAAACC AAGCAGGTTA TGAGGTACTC ACGGCAGAAA GCTATGCTGA AGCCCAATCG
ATTTTAGCAA CTCAACCAGA ATTGCTTTGT GCCGTTCTCG ACTATTGCCT GCCCGACGCA
CAAGATGGCG AAATCATCGA CTTGGTACTT TCTCATCAGC AAAAAGTCAT CGTGCTGACG
GCTATGTTTC AAGATGATGC TCGCGAAAAA ATGTTGGCCA AAGGTGTACT CGATTACATC
TTAAAGGACA GCATGGCATC GGTATCCTAC CTGCTTCCAC TCCTCAAACG ATTAACGAAT
AATCAGCACC ATAAGTGTTT GGTGGTCGAT GATTCAATGA CGGTTCGTCG CCATGTGGTG
CAACTACTAG AGCACCAATA CATACAAACA CTACAAGCTG AAAATGGCCA GCAAGCCATT
GAGCTGATCG AGCAGAATCC AGATATCACC TTGGTGCTGA CTGATCACGA TATGCCAGTA
AAAGACGGCA TTACCATGAT TCGCGAACTA CGCCAGAAAC TAGATAAGAA CCAACTTGCT
ATTCTTGGTA TCTCAGGCAG TGACGATCAC ACAATGACTG CTCGCTTTCT TAAAGCAGGT
GCGAATGACT TTCTATATAA GCCTTTCAAT CAAGAAGAGT TCTTCTGCCG AGTTCATCAA
ATCTTGGACA TGAAGGAAGC AACAACAGAA CTGTTTAGAA TGGCGAACCA AGATGCTCTC
ACGGGCCTGT GGAATCGACG TTTCTTGTTT GGGCAAGCGT GTAGCGGCTG CGAAAAGCGC
AACATCGCGA TGTTAGATAT CGACTTTTTC AAGAAGGTCA ACGATAACTA CGGGCATGAT
GGGGGTGATG CTGCACTTGT GATGGTGGCG AATATCTTGA AGATCTATTT CCCAGACGAT
GTAATTGCTC GCTTTGGCGG GGAAGAGTTC TGTATTCAAG CCTGTGGCAG TTATGACGAC
TTCGTCATTC GATTAGAGCA AATGCGCCAA CGTGTTGAAA AAACGCCAGT CCCTTACCAG
AACGATAGCA TCCAAGTAAC CATAAGTATT GGTGTATCGA GTGTTGAAGG AAACCTTGAT
CAACAGATTA AAGTTGCTGA TGACCGTTTA TATCAAGCGA AAGAAAGTGG TCGAAACCAG
ACTATCTACT AA
|
|---|
| Protein sequence | MSNKILVVED SRAFKNYLQQ LLNQAGYEVL TAESYAEAQS ILATQPELLC AVLDYCLPDA
QDGEIIDLVL SHQQKVIVLT AMFQDDAREK MLAKGVLDYI LKDSMASVSY LLPLLKRLTN
NQHHKCLVVD DSMTVRRHVV QLLEHQYIQT LQAENGQQAI ELIEQNPDIT LVLTDHDMPV
KDGITMIREL RQKLDKNQLA ILGISGSDDH TMTARFLKAG ANDFLYKPFN QEEFFCRVHQ
ILDMKEATTE LFRMANQDAL TGLWNRRFLF GQACSGCEKR NIAMLDIDFF KKVNDNYGHD
GGDAALVMVA NILKIYFPDD VIARFGGEEF CIQACGSYDD FVIRLEQMRQ RVEKTPVPYQ
NDSIQVTISI GVSSVEGNLD QQIKVADDRL YQAKESGRNQ TIY
|
|---|
| |