| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2518 |
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| Symbol | |
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| ID | 4019021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3007707 |
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| End bp | 3008930 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637956549 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_563521 |
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| Protein GI | 91793870 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCGAATTC TGATCGTTGA AGACAGTACT ACGGTATCTA AAATTTTACA GCATTACATT
GTTCAAGAAA TAGGCTGTGA AGTCGATACC GCCGCCGATC TCACCTCTGC CATTGCCTTA
CTCGATAAGC ATAGCTATTT CGTGGTGGTT GCCGACCTTG TGCTGCCGGA TGCACAGCAT
GGTGAGATAG TTAAATTGGT TCGTTCTGCC TACCAGACAC CTTGCATAGC GCTGACAGGG
CAGTTTAATG AAGAGCTTCG TACTGAGTTA CTCACCATGG GGATCGTCGA CTACATCCTT
AAAGAAAACC GCTACAGTTA TCAGTATGTT GCCAAGTTAA TCGCTAGGCT TTATCGAAAT
AAAGACGTTA AAGTCTTGAT AGCCGAGCAG TCGGTTATTA GTCGCAAATT TGTTAAGTTG
TTATTAGAGC AGCACTTGTT TCAAGTCATC GAAGTCGAAG ATGGTGCCGA GGCATTGACT
GTACTTGCCG AGCAGAAAGA CATTCGCTTA CTTATCACAG ATTATGATAT GCCAAACCTC
AATGGCGCCG ATTTGGTGAT TAAGTTAAGG GAAGAATATG AGCGGGAAGA TCTTGCCATT
ATCGGTTTGG CAAGTGATGC TAGCCTGTCG GCACGCTTCA TTAAAAATGG CGCCAACGAC
TTTTTGCAAA AGCCCTTTGT ACATGAAGAA TTTCATTGCC GCATCAATAA CACCTTAGAT
GCCCAGGACA TGATGAAAAT GTTATGGGAA AAGGCCAATC GAGATTTTCT CACTAAGGTC
TTTACCCGCA GGTATTTTTT TAGCCATTAT CAGGATGAAC ATGAAGAGCA AGGGTGTTTC
AGTTTAGCCT TGCTGGATAT CGACTTTTTC AAAAAAGTGA ACGACACCCA CGGACATGAT
GTGGGTGATG AAGTGCTAAT GGTGTTTGCC AGTCGATTAA CCGAAGCTTT TGGGCATAAA
TTCACTGTGG CCCGTTTTGG CGGTGAGGAA TTTGTGGTTG CATTTAAAGG GCTAGATATT
GAAAAAACCA TCACATTAAT GGAGGCGTTT CGGCAGCACA ATGAGCAAAA GAGCGTTAAG
ACATCGGCCG GTGAATTAAT CGTTACCTTT AGTTGCGGTT TAGCCGCCTT TGGCGATGAG
TTGATTGATG ATGTGTTAAT CAGGGCTGAT GAGGCCTTGT ATGAAGCCAA GCAGCAAGGC
CGAAATAGGA TTGTGATGCA TTAA
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| Protein sequence | MRILIVEDST TVSKILQHYI VQEIGCEVDT AADLTSAIAL LDKHSYFVVV ADLVLPDAQH
GEIVKLVRSA YQTPCIALTG QFNEELRTEL LTMGIVDYIL KENRYSYQYV AKLIARLYRN
KDVKVLIAEQ SVISRKFVKL LLEQHLFQVI EVEDGAEALT VLAEQKDIRL LITDYDMPNL
NGADLVIKLR EEYEREDLAI IGLASDASLS ARFIKNGAND FLQKPFVHEE FHCRINNTLD
AQDMMKMLWE KANRDFLTKV FTRRYFFSHY QDEHEEQGCF SLALLDIDFF KKVNDTHGHD
VGDEVLMVFA SRLTEAFGHK FTVARFGGEE FVVAFKGLDI EKTITLMEAF RQHNEQKSVK
TSAGELIVTF SCGLAAFGDE LIDDVLIRAD EALYEAKQQG RNRIVMH
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