Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3514 |
Symbol | |
ID | 6117846 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 4286663 |
End bp | 4287946 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641635065 |
Product | response regulator receiver modulated diguanylate cyclase |
Protein accession | YP_001761873 |
Protein GI | 170727847 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAACA ACTTGCTGGT TGTCGAAGAC AATAAGGCGA TAGCTTCCGT TATTGAGCAT ATCGGTGGCT CGCTAGGTTA CCGGGTTACC ATCGCATACT CCTTTGCCGA GCTAAAAAGC TTGCTGGTGA GTCACCATGA TTTTTTTGCC GCAACGGTGG ATTACAGCTT ACCTGATGCG GTCGATGGCC AGGCGATTTT CCATGTACTT GAGCACAATA TTCCCTGCAT CGTGATGACT GGAAAGATGA ATAACACCAT TCATCAGAAG CTACTTAGTC TACCTATTGT TGATTATCTA ACAAAAGAGA ATTCACAGGC CTACCACTAT CTACTGAGAG TACTTCATGG GCAGCTAACA AACCATGAGA TAGGTGTGTT AGTTGTCGAT GACTCACTGT CGGTGAGAAG TTATGTCTGT AACCTATTAA GTCGAAGAAA CTTCACGCTT TATGATGTGC CTGATGGTAC TAAGGCGCTG AATGCTTTGG CGATGCATCC TGAGATAAAG CTGATCATTA CTGATCAAGA GATGCCAGGC ATGAATGGCA TAGAGCTGGT GCAGGCGGTG AGAAAACAGT TTGCCGATAG AGAGCTGGTG ATAGTGGGCT ATTCAGGTAT CGATAAACCC TATCAATCAG CACGTTTTAT AAAAAGTGGT GCAGATGATT ATCTACAGAA GCCTTTTTGT CCTGAAGAGT TCTATTGCCG CGTATTTAAA AACGTCGAAA AATTGCAATA TATCGAAGAG ATAAAGATGG CTGCCGATAT GGACTATCTG ACTTCGTTAT CCAATCGTCG TCATTTTATC GAGCAGTTGA CTGAGCACTT CGATGAACTA CTCGTCAATA ATCTTGAGCA CCTGTTAATT TTTATTCATG TGGATGACTT TAAAGGGATA AATGAGTCTT TTGGTCACAG TGGCGGTGAC AAGATATTAG TAGAGCTTGC TGAGTTGTTG AAAAAAAGCA TTGAGCCTCC CTACCGTGCA AGGTTTGGTG GTGCGGAGTT TTGCTGTTTA ATCTCAGGTT CAAGTTTGGT GAAAAATAGA GAGCAGGTAG AGAAACTAAC ACAGGCTGCT AGCGCACTTT CATTCACTCT TAAAGAGCGT GAAATGTGTT TTAAAATCAG CGTCGGTGGA GCACAGATGT GCGACAAATC AACGGTTAAA ACGTTACTGT CACAAGCCGA CACGGCATTT CAAAAAGCGT TATCACAGGG AGGAAACAGC ACTGTTATTC ATGAAGTGCA AGAGGGGGAG AAAGAAAAAA GTAGAGGTAG TTAA
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Protein sequence | MMNNLLVVED NKAIASVIEH IGGSLGYRVT IAYSFAELKS LLVSHHDFFA ATVDYSLPDA VDGQAIFHVL EHNIPCIVMT GKMNNTIHQK LLSLPIVDYL TKENSQAYHY LLRVLHGQLT NHEIGVLVVD DSLSVRSYVC NLLSRRNFTL YDVPDGTKAL NALAMHPEIK LIITDQEMPG MNGIELVQAV RKQFADRELV IVGYSGIDKP YQSARFIKSG ADDYLQKPFC PEEFYCRVFK NVEKLQYIEE IKMAADMDYL TSLSNRRHFI EQLTEHFDEL LVNNLEHLLI FIHVDDFKGI NESFGHSGGD KILVELAELL KKSIEPPYRA RFGGAEFCCL ISGSSLVKNR EQVEKLTQAA SALSFTLKER EMCFKISVGG AQMCDKSTVK TLLSQADTAF QKALSQGGNS TVIHEVQEGE KEKSRGS
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