Gene Swoo_0828 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0828 
Symbol 
ID6115062 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1115077 
End bp1116051 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content42% 
IMG OID641632313 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_001759218 
Protein GI170725192 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGAAT ATCTCAACAC AGGGTTAAGT ATTAAAGATG TCAATGAGCC TCAATTTGTT 
ATCAAGGAAG ATCTAGATAA AATCTTAATT ATTGACGATG CTAGAGACAA TCGAGCACTA
TTATCAGAGC TATTAATGCC TGAATATAAA GTTCTTTTAG CTAAAGATGG CGTACAAGGT
CTTAATCTTG CCTGTAAACA TAGTCCAGAT TTAATCTTGT TAGATGTGAT CATGCCTGGC
ATCAATGGTT ATCAAGTCAT CAAATCCCTG AAAAGCGATG AATCGACAAT GGACATCCCC
GTCATCTTCA TCTCCTCGAA AATATCAACT GAAGATGAGA AAATCGGCTT AGATCTTGGT
GCCGTTGACT ATATCACTAA GCCTTTTCAC CCCCCAATTG TGCAAGCTAG GGTACGTAAT
CATCTACTGG GACAGCGTCA CAAGAACCTA CTTGAGCAAC TCGCTCTCGT TGACAGCTTA
ACTGAAGTAT ATAACCGCCG ATTCTATGAG TTAGATATTA GAAAGGTGTG GAGCGCCTGT
AATCGAAACG ACACTGAACT ATCTATCGCC ATGATCGATA TCGACTTTTT CAAAAGTTAT
AATGATGATT ACGGACATCT AAGTGGGGAT AATGCCCTCC GCCTTGTCGC CAGTCACATC
AAAAAACAGC TGAAACGTCC CCATGATGTC ATTGCACGCT ACGGTGGAGA GGAGTTTGCG
ATAATTTTGC CAAACACGAA TGCTGAAAGT GCCCGTAACC TATTATCTAA TATCTGCAGA
TCTGTCGAAA ACCTACAGGT CGAACACGAT TCATCATCAA TCTCCCACTA CTTAACCATC
AGCGTTGGTG GCGCATCAAC GATCCCCAGC AGAGATGCCG ATCATGAGTC ATTTTTGAAA
GTTGTAGATG AGCATCTATA CCAAGCTAAA GCCCAAGGAA GAAACAAAGT ATGTTGGAAG
GAGTCAAGAG AGTGA
 
Protein sequence
MDEYLNTGLS IKDVNEPQFV IKEDLDKILI IDDARDNRAL LSELLMPEYK VLLAKDGVQG 
LNLACKHSPD LILLDVIMPG INGYQVIKSL KSDESTMDIP VIFISSKIST EDEKIGLDLG
AVDYITKPFH PPIVQARVRN HLLGQRHKNL LEQLALVDSL TEVYNRRFYE LDIRKVWSAC
NRNDTELSIA MIDIDFFKSY NDDYGHLSGD NALRLVASHI KKQLKRPHDV IARYGGEEFA
IILPNTNAES ARNLLSNICR SVENLQVEHD SSSISHYLTI SVGGASTIPS RDADHESFLK
VVDEHLYQAK AQGRNKVCWK ESRE