More than 300 homologs were found in PanDaTox collection
for query gene Ssed_1382 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_1382  response regulator receiver protein  100 
 
 
302 aa  622  1e-177  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1513  response regulator receiver modulated diguanylate cyclase  69.44 
 
 
301 aa  440  9.999999999999999e-123  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0153071 
 
 
-
 
NC_008700  Sama_0065  response regulator receiver protein  58.95 
 
 
305 aa  353  2e-96  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3790  response regulator receiver modulated diguanylate cyclase  57.93 
 
 
300 aa  338  8e-92  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0365  response regulator receiver modulated diguanylate cyclase  51.51 
 
 
308 aa  279  4e-74  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2955  response regulator receiver modulated diguanylate cyclase  47.67 
 
 
308 aa  247  2e-64  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0218  diguanylate cyclase  46.8 
 
 
304 aa  245  8e-64  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1341  response regulator receiver modulated diguanylate cyclase  42.81 
 
 
319 aa  232  6e-60  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3123  response regulator receiver modulated diguanylate cyclase  42.42 
 
 
312 aa  227  2e-58  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0748  response regulator receiver protein  41.24 
 
 
312 aa  226  5.0000000000000005e-58  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1561  response regulator receiver modulated diguanylate cyclase  42.71 
 
 
455 aa  223  3e-57  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000734361  n/a   
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  41.1 
 
 
312 aa  221  9.999999999999999e-57  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1507  response regulator receiver modulated diguanylate cyclase  42.86 
 
 
308 aa  219  3.9999999999999997e-56  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.914031 
 
 
-
 
NC_010002  Daci_1192  response regulator receiver modulated diguanylate cyclase  41.84 
 
 
316 aa  218  7e-56  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2041  response regulator receiver modulated diguanylate cyclase  41.41 
 
 
317 aa  218  1e-55  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_2067  response regulator receiver modulated diguanylate cyclase  41.41 
 
 
317 aa  218  1e-55  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_4132  response regulator receiver modulated diguanylate cyclase  41.1 
 
 
310 aa  216  2.9999999999999998e-55  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2089  diguanylate cyclase  39.18 
 
 
306 aa  216  2.9999999999999998e-55  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2032  response regulator receiver modulated diguanylate cyclase  41.5 
 
 
310 aa  216  4e-55  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_4015  response regulator receiver modulated diguanylate cyclase  41.33 
 
 
315 aa  216  4e-55  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3528  response regulator receiver modulated diguanylate cyclase  41.98 
 
 
310 aa  215  5.9999999999999996e-55  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_4204  response regulator receiver modulated diguanylate cyclase  41.1 
 
 
310 aa  215  5.9999999999999996e-55  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  38.96 
 
 
317 aa  214  9.999999999999999e-55  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_4336  response regulator receiver modulated diguanylate cyclase  40.75 
 
 
310 aa  214  9.999999999999999e-55  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2812  diguanylate cyclase  38.05 
 
 
315 aa  211  1e-53  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3544  response regulator receiver modulated diguanylate cyclase  40.74 
 
 
322 aa  209  5e-53  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0106122 
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  38.59 
 
 
308 aa  209  6e-53  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  38.59 
 
 
308 aa  209  6e-53  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  38.85 
 
 
322 aa  206  4e-52  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_007954  Sden_1684  GGDEF domain-containing protein  40.55 
 
 
323 aa  205  9e-52  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2939  GGDEF  40.89 
 
 
318 aa  203  4e-51  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.417006  normal 
 
 
-
 
NC_010506  Swoo_0828  response regulator receiver modulated diguanylate cyclase  40.34 
 
 
324 aa  202  5e-51  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_29300  Response regulator  40.88 
 
 
310 aa  200  1.9999999999999998e-50  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  41.23 
 
 
349 aa  200  1.9999999999999998e-50  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0135  response regulator receiver modulated diguanylate cyclase  41.31 
 
 
306 aa  199  3.9999999999999996e-50  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.248217 
 
 
-
 
NC_011728  BbuZS7_0421  response regulatory protein  37.37 
 
 
305 aa  196  4.0000000000000005e-49  Borrelia burgdorferi ZS7  Bacteria  normal  0.972098  n/a   
 
 
-
 
NC_008228  Patl_4177  diguanylate cyclase  38.21 
 
 
347 aa  196  4.0000000000000005e-49  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3625  response regulator receiver modulated diguanylate cyclase  37.62 
 
 
322 aa  196  5.000000000000001e-49  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3557  response regulator receiver modulated diguanylate cyclase  37.62 
 
 
322 aa  195  6e-49  Anaeromyxobacter sp. K  Bacteria  normal  0.457648  n/a   
 
 
-
 
NC_007760  Adeh_3473  response regulator receiver modulated diguanylate cyclase  37.62 
 
 
351 aa  195  8.000000000000001e-49  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3669  diguanylate cyclase  37.33 
 
 
300 aa  192  4e-48  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.0119902  n/a   
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  34.73 
 
 
314 aa  190  2.9999999999999997e-47  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1645  response regulator receiver modulated diguanylate cyclase  37.37 
 
 
308 aa  187  2e-46  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.456967 
 
 
-
 
NC_007517  Gmet_0069  response regulator receiver modulated diguanylate cyclase  37.75 
 
 
314 aa  187  2e-46  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.840661 
 
 
-
 
NC_002939  GSU1643  GGDEF/response regulator receiver domain-containing protein  36.96 
 
 
316 aa  186  4e-46  Geobacter sulfurreducens PCA  Bacteria  normal  0.176359  n/a   
 
 
-
 
NC_007912  Sde_2463  response regulator receiver modulated diguanylate cyclase  35.55 
 
 
301 aa  186  4e-46  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_5066  response regulator receiver modulated diguanylate cyclase  36.31 
 
 
338 aa  186  5e-46  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0195  response regulator receiver modulated diguanylate cyclase  41.27 
 
 
309 aa  185  6e-46  Geobacter uraniireducens Rf4  Bacteria  normal  0.0106599  n/a   
 
 
-
 
NC_010814  Glov_3614  response regulator receiver modulated diguanylate cyclase  37 
 
 
310 aa  182  5.0000000000000004e-45  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1846  response regulator receiver modulated diguanylate cyclase  36.7 
 
 
314 aa  182  8.000000000000001e-45  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2442  response regulator receiver modulated diguanylate cyclase  37.62 
 
 
316 aa  180  2e-44  Geobacter lovleyi SZ  Bacteria  normal  0.103678  n/a   
 
 
-
 
NC_011891  A2cp1_2397  response regulator receiver modulated diguanylate cyclase  37.79 
 
 
434 aa  179  4e-44  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.593336  n/a   
 
 
-
 
NC_011145  AnaeK_2309  response regulator receiver modulated diguanylate cyclase  37.79 
 
 
434 aa  179  4e-44  Anaeromyxobacter sp. K  Bacteria  normal  0.484645  n/a   
 
 
-
 
NC_009253  Dred_1554  response regulator receiver modulated diguanylate cyclase  35.64 
 
 
419 aa  179  4.999999999999999e-44  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3376  GGDEF/response regulator receiver domain-containing protein  37.25 
 
 
308 aa  179  5.999999999999999e-44  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  36.02 
 
 
337 aa  179  7e-44  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_011662  Tmz1t_3851  response regulator receiver modulated diguanylate cyclase  35.94 
 
 
634 aa  176  4e-43  Thauera sp. MZ1T  Bacteria  normal  0.0571122  n/a   
 
 
-
 
NC_011313  VSAL_II0052  response regulator protein  39.32 
 
 
299 aa  175  7e-43  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.189873  n/a   
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  35.63 
 
 
353 aa  175  7e-43  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_011138  MADE_00724  putative response regulator  34.21 
 
 
329 aa  175  8e-43  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2951  response regulator receiver modulated diguanylate cyclase  40.08 
 
 
306 aa  175  9.999999999999999e-43  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007760  Adeh_1556  response regulator receiver modulated diguanylate cyclase  38.19 
 
 
300 aa  174  9.999999999999999e-43  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1332  response regulator receiver modulated diguanylate cyclase  39.3 
 
 
306 aa  174  1.9999999999999998e-42  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2383  response regulator receiver modulated diguanylate cyclase  34.43 
 
 
434 aa  173  1.9999999999999998e-42  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.00665942 
 
 
-
 
NC_007484  Noc_0847  two component diguanylate cyclase  36 
 
 
327 aa  173  3.9999999999999995e-42  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02505  putative response regulator  34.36 
 
 
306 aa  171  1e-41  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0157  response regulator receiver modulated diguanylate cyclase  37.59 
 
 
917 aa  170  2e-41  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2257  response regulator receiver modulated diguanylate cyclase  36.61 
 
 
509 aa  169  5e-41  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.0520127 
 
 
-
 
NC_013161  Cyan8802_0849  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.5 
 
 
593 aa  169  7e-41  Cyanothece sp. PCC 8802  Bacteria  normal  0.386146  normal 
 
 
-
 
NC_010814  Glov_0963  response regulator receiver modulated diguanylate cyclase  35.12 
 
 
300 aa  169  7e-41  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0820  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.5 
 
 
593 aa  169  7e-41  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_1645  hypothetical protein  37.3 
 
 
344 aa  168  1e-40  Shewanella sediminis HAW-EB3  Bacteria  normal  0.176846  normal 
 
 
-
 
NC_007413  Ava_1030  response regulator receiver modulated diguanylate cyclase  36 
 
 
330 aa  167  2e-40  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.33399 
 
 
-
 
NC_011894  Mnod_7417  response regulator receiver modulated diguanylate cyclase  34.44 
 
 
457 aa  167  2e-40  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.196799  n/a   
 
 
-
 
NC_009636  Smed_0926  response regulator PleD  36 
 
 
455 aa  167  2e-40  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.773886 
 
 
-
 
NC_002939  GSU2313  response regulator  36.88 
 
 
301 aa  167  2.9999999999999998e-40  Geobacter sulfurreducens PCA  Bacteria  normal  0.483613  n/a   
 
 
-
 
NC_013173  Dbac_0019  response regulator receiver modulated diguanylate cyclase  34.93 
 
 
341 aa  167  2.9999999999999998e-40  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0416556  n/a   
 
 
-
 
NC_008346  Swol_0600  response regulator receiver protein  36.54 
 
 
301 aa  166  4e-40  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3005  response regulator receiver modulated diguanylate cyclase  34.9 
 
 
303 aa  166  4e-40  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.000288968 
 
 
-
 
NC_011369  Rleg2_1290  response regulator PleD  38.67 
 
 
457 aa  166  5.9999999999999996e-40  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0138689  hitchhiker  0.00259394 
 
 
-
 
NC_009656  PSPA7_5563  putative two-component response regulator  34.01 
 
 
542 aa  165  6.9999999999999995e-40  Pseudomonas aeruginosa PA7  Bacteria  normal  0.591571  n/a   
 
 
-
 
NC_007912  Sde_0667  response regulator receiver domain-containing protein  33.33 
 
 
1526 aa  165  1.0000000000000001e-39  Saccharophagus degradans 2-40  Bacteria  normal  0.0280955  hitchhiker  0.000000898802 
 
 
-
 
NC_008463  PA14_64050  putative two-component response regulator  33.67 
 
 
542 aa  164  1.0000000000000001e-39  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  40.81 
 
 
322 aa  164  2.0000000000000002e-39  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_009668  Oant_3677  response regulator PleD  34.87 
 
 
461 aa  164  2.0000000000000002e-39  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00345303  n/a   
 
 
-
 
NC_007484  Noc_1271  hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase  33.22 
 
 
1499 aa  163  3e-39  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.422796  n/a   
 
 
-
 
NC_013422  Hneap_0133  response regulator receiver modulated diguanylate cyclase  34.21 
 
 
461 aa  163  4.0000000000000004e-39  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3583  response regulator receiver modulated diguanylate cyclase  36.3 
 
 
322 aa  162  5.0000000000000005e-39  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  hitchhiker  0.000864033 
 
 
-
 
NC_008254  Meso_1348  response regulator PleD  34.33 
 
 
457 aa  162  8.000000000000001e-39  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1382  response regulator PleD  37.89 
 
 
457 aa  162  9e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.390598 
 
 
-
 
NC_011831  Cagg_1830  response regulator receiver modulated diguanylate cyclase  35.88 
 
 
941 aa  161  1e-38  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_1974  response regulator receiver modulated diguanylate cyclase  34.89 
 
 
340 aa  161  1e-38  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.098619 
 
 
-
 
NC_009504  BOV_A0575  response regulator PleD  35.1 
 
 
456 aa  161  1e-38  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0610  response regulator PleD  34.77 
 
 
461 aa  160  2e-38  Brucella suis 1330  Bacteria  normal  0.961713  n/a   
 
 
-
 
NC_011989  Avi_1750  response regulator PleD  35.06 
 
 
457 aa  161  2e-38  Agrobacterium vitis S4  Bacteria  normal  0.263569  n/a   
 
 
-
 
NC_007298  Daro_0709  response regulator receiver modulated diguanylate cyclase  34.09 
 
 
322 aa  160  3e-38  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.169559 
 
 
-
 
NC_007799  ECH_0773  response regulator PleD  34.32 
 
 
458 aa  160  3e-38  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0221  response regulator PleD  32.12 
 
 
460 aa  159  4e-38  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3408  response regulator receiver modulated metal dependent phosphohydrolase  58.14 
 
 
346 aa  159  4e-38  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_4060  response regulator receiver modulated metal dependent phosphohydrolase  57.03 
 
 
365 aa  159  5e-38  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0748941 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>