Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2089 |
Symbol | |
ID | 4173768 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 2534536 |
End bp | 2535456 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638055097 |
Product | diguanylate cyclase |
Protein accession | YP_661661 |
Protein GI | 109898406 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAATCAAC CCACTACATT CCTGACTAAC GACTCGTTAG CGAATGCAAA AATTTTAGTG GTGGACGATC AACCTATTAA TATTCAGGTG ATCAACCAGA TACTGGGGGA TAGCTACCAA TTAAACTTCG CTAAAACGGG CCAAGAAGCG TTAGATATTT GCTTACGTGA CGCACCGGAT CTGATCCTGA TGGACGTTAT TATGCCGAAT TTAGATGGCC TTACCACCTG TAGAATTATT AAGAACGATC CTGAAATAAG TGACATTCCT ATTGTATTTA TTACCTCATT GCAGCGCTCA GAAGAAGAAA ACGCGTGCTG GCAAGCCGGT GGCATTGATT ATATGACCAA GCCGGTGAAT CCGTTGCCGT TGAAAAACCG TGTTAGGGCG CACCTCACAT TAAAATTTCA AGCTGATGTT CTTAAGAAGC TAGCCTACCT TGATGGCCTA ACTGGGGTGT ACAACCGGCG CTATTTGGAC GAGTATTTGG CGAAGCAGGT AGCGCAAGCA AAACGGACTA ATCAGCCAAT TTCTTTACTC ATGGTCGACG TTGATCTGTT CAAGCAGTAC AACGACGAAT ACGGCCATCT AGTGGCCGAC GACCAGTTGA AACTTGTGGC CTTAACGGTA AGGAGCAGTT TAAATCGCCC AACTGATATT GCGGCAAGAT ATGGTGGTGA AGAATTCACG TGCGTGTTAC CTAACACAGA CGAACGCGGC GCAAAGCATG TTGCTAAAAA GATTCAACAG GCTGTTGACC AACTTAAAAT CTCTCATCGG CTGTCACCGC ATCAAATTTT GACGGTCAGT ATAGGTGTAT CTACTATCTT GCCAGACCAG AATTATTCTA GTGATCTTAT TTCTATAGCA GATAAAAACC TATATAAAGC CAAACACACA GGGCGTAACA AGGTCGTATA A
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Protein sequence | MNQPTTFLTN DSLANAKILV VDDQPINIQV INQILGDSYQ LNFAKTGQEA LDICLRDAPD LILMDVIMPN LDGLTTCRII KNDPEISDIP IVFITSLQRS EEENACWQAG GIDYMTKPVN PLPLKNRVRA HLTLKFQADV LKKLAYLDGL TGVYNRRYLD EYLAKQVAQA KRTNQPISLL MVDVDLFKQY NDEYGHLVAD DQLKLVALTV RSSLNRPTDI AARYGGEEFT CVLPNTDERG AKHVAKKIQQ AVDQLKISHR LSPHQILTVS IGVSTILPDQ NYSSDLISIA DKNLYKAKHT GRNKVV
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