Gene Patl_2089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2089 
Symbol 
ID4173768 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2534536 
End bp2535456 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content44% 
IMG OID638055097 
Productdiguanylate cyclase 
Protein accessionYP_661661 
Protein GI109898406 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAATCAAC CCACTACATT CCTGACTAAC GACTCGTTAG CGAATGCAAA AATTTTAGTG 
GTGGACGATC AACCTATTAA TATTCAGGTG ATCAACCAGA TACTGGGGGA TAGCTACCAA
TTAAACTTCG CTAAAACGGG CCAAGAAGCG TTAGATATTT GCTTACGTGA CGCACCGGAT
CTGATCCTGA TGGACGTTAT TATGCCGAAT TTAGATGGCC TTACCACCTG TAGAATTATT
AAGAACGATC CTGAAATAAG TGACATTCCT ATTGTATTTA TTACCTCATT GCAGCGCTCA
GAAGAAGAAA ACGCGTGCTG GCAAGCCGGT GGCATTGATT ATATGACCAA GCCGGTGAAT
CCGTTGCCGT TGAAAAACCG TGTTAGGGCG CACCTCACAT TAAAATTTCA AGCTGATGTT
CTTAAGAAGC TAGCCTACCT TGATGGCCTA ACTGGGGTGT ACAACCGGCG CTATTTGGAC
GAGTATTTGG CGAAGCAGGT AGCGCAAGCA AAACGGACTA ATCAGCCAAT TTCTTTACTC
ATGGTCGACG TTGATCTGTT CAAGCAGTAC AACGACGAAT ACGGCCATCT AGTGGCCGAC
GACCAGTTGA AACTTGTGGC CTTAACGGTA AGGAGCAGTT TAAATCGCCC AACTGATATT
GCGGCAAGAT ATGGTGGTGA AGAATTCACG TGCGTGTTAC CTAACACAGA CGAACGCGGC
GCAAAGCATG TTGCTAAAAA GATTCAACAG GCTGTTGACC AACTTAAAAT CTCTCATCGG
CTGTCACCGC ATCAAATTTT GACGGTCAGT ATAGGTGTAT CTACTATCTT GCCAGACCAG
AATTATTCTA GTGATCTTAT TTCTATAGCA GATAAAAACC TATATAAAGC CAAACACACA
GGGCGTAACA AGGTCGTATA A
 
Protein sequence
MNQPTTFLTN DSLANAKILV VDDQPINIQV INQILGDSYQ LNFAKTGQEA LDICLRDAPD 
LILMDVIMPN LDGLTTCRII KNDPEISDIP IVFITSLQRS EEENACWQAG GIDYMTKPVN
PLPLKNRVRA HLTLKFQADV LKKLAYLDGL TGVYNRRYLD EYLAKQVAQA KRTNQPISLL
MVDVDLFKQY NDEYGHLVAD DQLKLVALTV RSSLNRPTDI AARYGGEEFT CVLPNTDERG
AKHVAKKIQQ AVDQLKISHR LSPHQILTVS IGVSTILPDQ NYSSDLISIA DKNLYKAKHT
GRNKVV