| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0926 |
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| Symbol | pleD |
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| ID | 5321767 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1000965 |
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| End bp | 1002332 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640789866 |
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| Product | response regulator PleD |
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| Protein accession | YP_001326616 |
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| Protein GI | 150396149 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.773886 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCGC GTATCCTCGT CGTTGATGAC GTACCAGCCA ACGTGAAGCT ATTGGAAGCG
CGGCTGGTTG CTGAATATTT CGAAGTGCTG ACGGCTGCAG ACGGACACGC AGCGCTGGCT
ATTTGCGAAC AGACGTCCGT CGACCTCGTT CTGCTCGATA TCATGATGCC TCATATGGAT
GGGTTCGAGG TTTGCGAAAG GCTCAAGGCC AGCAGCCGCA CCGCGCATAT TCCGGTGGTG
ATGATAACCG CGTTAGACCA GCCGTCCGAC CGTGTGCGCG GGCTGAAAGC CGGTGCGGAC
GACTTTCTGA CAAAACCGGT CAACGATCTG CAGCTCATGT CCCGCGTAAA GAGCCTCGTG
CGTTTGAAGA ACGTCAGCGA CGAGCTGCGT CTCAGGGCGC AGACGGCACA GACGATCGGA
TTGCAGGAGT TGAGTCGCCT TGATCGGCCC GACGAGCCCG GCAGCGTTCT GCTGGTCGAT
GGCCGCGCAT CCTCGCAGGA GCGGCTCACT CGCGCTCTGA GGCCCATCGC CGATGTTGCT
GTCCTGTCGG ATGCGCAGGC TGCTCTCTTC GAGGCCGCCG AGAACAGTTT CGACCTTGTC
ATCGTCAATG CGAACTTCGA CGATTACGAT CCGCTACGTC TGTGTTCGCA ATTGCGCTCG
CTCGAGCGGA CCCGCTTCAT TCCCATCCTG CTGGTTACCG AACAGGGAAA CGACGAGATG
ATCGTCCGTG CACTCGAACT GGGCGTGACG GATTACATCA TGCGCCCCGT CGATCCGAAC
GAACTTGTCG CCCGCTCCCT CACGCAGATC CGGCGCAAGC ACTGCAATGA CCGCTTGCGC
GCAAGTGTTC AGCAGACGAT CGAGTTGGCA GTGACCGATG ATCTCACCGG TCTTCACAAC
CGGCGCTATC TGGAGAATCA CTTGAAACTG CTGATCGATC GTGCGGGCGC CCGAGGGCGT
CCGCTGTCGA TCTGCATTAC CGATATCGAT CGCTTCAAGC GTGTGAACGA CACCTACGGA
CATGATGCCG GCGACGACGT GCTGCGCGAG TTCGCAAACC GAGTCCGCGC AACGGTGCGT
GGCGCGGACC TCGCCTGCCG GTTCGGTGGG GAGGAGTTCG TCGTCGTCAT GCCGGACACG
ACACCTGAAA TGGCGGCAAT CGTTGCCGAG AGGCTTCGGC TGTCAGTCGA GAGTCGCGGG
TTCGACATTG CGGAGGCTGC GACGGTACTG ACAGTCACCG CGTCGCTCGG CATAGCGAGC
CTGAGGCCGG ACGGCGACAC GGCAGAGGCT CTGCTGAAAA GGGCCGACAT GGCGCTCTAC
GAGGCAAAGA ACGGCGGGCG CAATCGTGTC GTCGCAGCCG CGGCCTGA
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| Protein sequence | MTARILVVDD VPANVKLLEA RLVAEYFEVL TAADGHAALA ICEQTSVDLV LLDIMMPHMD
GFEVCERLKA SSRTAHIPVV MITALDQPSD RVRGLKAGAD DFLTKPVNDL QLMSRVKSLV
RLKNVSDELR LRAQTAQTIG LQELSRLDRP DEPGSVLLVD GRASSQERLT RALRPIADVA
VLSDAQAALF EAAENSFDLV IVNANFDDYD PLRLCSQLRS LERTRFIPIL LVTEQGNDEM
IVRALELGVT DYIMRPVDPN ELVARSLTQI RRKHCNDRLR ASVQQTIELA VTDDLTGLHN
RRYLENHLKL LIDRAGARGR PLSICITDID RFKRVNDTYG HDAGDDVLRE FANRVRATVR
GADLACRFGG EEFVVVMPDT TPEMAAIVAE RLRLSVESRG FDIAEAATVL TVTASLGIAS
LRPDGDTAEA LLKRADMALY EAKNGGRNRV VAAAA
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