| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3544 |
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| Symbol | |
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| ID | 6160916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3965252 |
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| End bp | 3966220 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666317 |
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| Product | response regulator receiver modulated diguanylate cyclase |
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| Protein accession | YP_001792563 |
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| Protein GI | 171060214 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0106122 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACGCCT CAGAACCCGA AGTCGCACCG ATCCCGCGCC TGCCGTCCGA CGAACCGAAC
CGGCGCCGCC GCCTGCTGAT CGTCGACGAC CAGCCGATCA ACATCCAGGC GCTGTACCAG
GTCTTTGCGG CCGACCACCA GGTCTTCATG GCCACCAGCG GCCCGCAGGC ACTGGCGCTG
TGCCTGAGCA AGCAGCCCGA CCTGGTGCTG CTCGACGTGA TGATGCCGGG CATGGACGGC
TTCGAGGTCT GCCGCCGGCT GAAGGCCGAT CCGGCCACCG CCGACATCCC GGTGATCTTC
GTCACCGCCC ACAGCGACGA GGCGGCCGAG ACGCTCGGGC TCGATGTCGG CGCGGTCGAT
TTCATCTCCA AGCCGATCAA CCCGAACATC GTGCGCGCCC GGGTCCGCAC CCATGTCACG
CTGAAGGCGC AGAGCGACCT GCTGCGCCAC TGGGTCTACA TCGACGGCCT GACCGGCGTG
CACAACCGGC GCTACTTCGA CGAGCGCCTG GCCACCGAAT GGGGCCGCGC GGTGCGCTGC
GGCACCGCGC TCAGCGTGAT CCTGATCGAC GTCGACTTCT TCAAGCCCTA CAACGACCAC
TACGGCCACC AGACCGGCGA CGACTGCCTG CGCCGCGTCG CCAGCACGCT CAAGGCCGGC
CTCAAGCGCC CGGGCGACCT GATGGCGCGC TACGGCGGCG AGGAGTTCGC CTGCCTGCTG
CCCGAGACGC CGCTGTCGGG CGCGCTCGAA CTCGCGCATC AGCTCGGCCA GCACGTGTTC
GACCAGCAGA TCGCCCACGA CGCCTCGCTG GTCGCGCCGG TGGTCACGGT CAGCCTGGGG
GTGTGCAGCA AGCGCGAGGA CACCGTGGCC ACCGTCGCCG CACTGGTGCG CGAGGCCGAC
GCCCAGCTCT ACATCGCCAA GTCGCGCGGG CGCCACCAGG CCTGCGGCGC CGAGCTCGAC
CAGCCTTGA
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| Protein sequence | MNASEPEVAP IPRLPSDEPN RRRRLLIVDD QPINIQALYQ VFAADHQVFM ATSGPQALAL
CLSKQPDLVL LDVMMPGMDG FEVCRRLKAD PATADIPVIF VTAHSDEAAE TLGLDVGAVD
FISKPINPNI VRARVRTHVT LKAQSDLLRH WVYIDGLTGV HNRRYFDERL ATEWGRAVRC
GTALSVILID VDFFKPYNDH YGHQTGDDCL RRVASTLKAG LKRPGDLMAR YGGEEFACLL
PETPLSGALE LAHQLGQHVF DQQIAHDASL VAPVVTVSLG VCSKREDTVA TVAALVREAD
AQLYIAKSRG RHQACGAELD QP
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