| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2383 |
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| Symbol | |
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| ID | 3967903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3022656 |
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| End bp | 3023960 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637921474 |
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| Product | response regulator receiver modulated diguanylate cyclase |
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| Protein accession | YP_527855 |
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| Protein GI | 90022028 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00665942 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAATAT TGCTTGTTGA AGATAGCGCC ACCCTGCGAC ACGCCATGAG CCATTTTGTG
CGCACAGCTG GGCACGAGCC TGTTATTGCC AAAAGTGGTG AAGAAGCACT GCAAATTATT
GAACAAACCG CGGTGGACCT CATCATTATG GATGTGGAGA TGCCAGGGCT AGATGGCTTC
GAAACAACTC GCCTTATTCG CGAATGGCTT GGCGATCACT GGATACCGAT CATTTTCGTG
ACCGGCATGA GCGAAGATGA AAGCCTTGAA GAAGGCATAG ATGCCGGTGG TGATGACTAC
CTTGTAAAAC CTGTAAGCCA AATGATTATA TCGGCAAAAA TACGGGCCAT GGAGCGCATA
ACCGATATGC GCAACCAACT AGCAACCCTT AATCGCGAGC TTAAGGTGCT CAGTCAGCGA
GATGGGCTTA CCCACCTTTA TAATCGCCGC ACATTTGAAG AGCTAGCCGA AAAGCAGTGG
AAAATAGCCA CCCGCAACAA GGCCCCACTG GCCGTATTGC TATTAGATAT CGACCATTTT
AAGCAATATA ACGATTACTA CGGCCACCAA CAGGGTGATC GCTGCATTCA AACTATTTCT
AGCGTATTGG CCAAATGCGT CACCCGTCCC GACGATTTAA TCGGTCGCTA TGGCGGTGAA
GAATTCATTA TTTTATTACC CAACACCCCA GAAAACGGTG CACACTATAT AGCAGAGCAA
ATTCGCAAGT CGGTTGAGCG CTTGCAAATT AAACATCGCG CTTCGCCGTC CAATACCTAC
GTTACCGTTA GCATTGGTGG AGCCGCCCTT AATTACACTA CTGGCACTAC CTGGGCACAC
CAAGTGGGGC TTGCAGATAA GGCCCTTTAT ACCGCTAAAG CCAGCGGCAG AAATACCAGC
ACAATTCAAT CCGCCGACCC CAACGGCTTA ATACTTGTTG TAGATGACGA TGACGCAAGT
TTGTCTCTTA TTAGCGACAT ATTAAAAGGC CATTGCTCCA TCATTACAGC CAAAACTAGT
GAAGAATGCA TGGAGCTGGC CCAAGAGCTT CAACCAGACC TTATTTTGAT GGATGCCTAC
CTACCCGGTG TAAACGGCTA CGAAACCTGC AAGAGCTTAA CCTCGAACAT CGATACCGAA
GAGATACCTA TTATTCTTAC CTGCCAAGCA GATAGCCTAA GCGAGGTGGA AGAGTTTGCG
GCAAAAGCGG GAGCGAAAAC AGCCCTACTT AAACCGCTAG ATAAGCACAA GCTTATAGAT
AAGATCGGCC GCTTTATTAG CCCCAACAGC CTCTCTTTGC CGTAA
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| Protein sequence | MKILLVEDSA TLRHAMSHFV RTAGHEPVIA KSGEEALQII EQTAVDLIIM DVEMPGLDGF
ETTRLIREWL GDHWIPIIFV TGMSEDESLE EGIDAGGDDY LVKPVSQMII SAKIRAMERI
TDMRNQLATL NRELKVLSQR DGLTHLYNRR TFEELAEKQW KIATRNKAPL AVLLLDIDHF
KQYNDYYGHQ QGDRCIQTIS SVLAKCVTRP DDLIGRYGGE EFIILLPNTP ENGAHYIAEQ
IRKSVERLQI KHRASPSNTY VTVSIGGAAL NYTTGTTWAH QVGLADKALY TAKASGRNTS
TIQSADPNGL ILVVDDDDAS LSLISDILKG HCSIITAKTS EECMELAQEL QPDLILMDAY
LPGVNGYETC KSLTSNIDTE EIPIILTCQA DSLSEVEEFA AKAGAKTALL KPLDKHKLID
KIGRFISPNS LSLP
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