Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3669 |
Symbol | |
ID | 4175449 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 4425328 |
End bp | 4426230 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638056699 |
Product | diguanylate cyclase |
Protein accession | YP_663225 |
Protein GI | 109899970 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0119902 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTAAAA ACGCTGAAAA AGCGCGAATA TTAATAGTCG ATGATGAACC GATCAATATT CATGTTTTAT CGAACACATT AACGGATACA TACAACGTCT TTGCGGTCAC CTCTGGGCGA GAAGCGATCG CGTTTTGCAT GACGCACGCC CCTGATCTGG TGTTAATGGA TATGGATATG CCTGACATCA ACGGCGTAGA AGCCTGTAAA ACGTTAAAAG AAAAAAGTGA AACGCATGAT ATCCCTATCG TATTCGTGAC AGGGCACGGT GATTCAGATG CGGAAGACAA ATGTTGGGAA GCAGGCGGCG TTGATTTTTT AACCAAGCCG GTAAACGCCA ATACCTTAAA TCATCGTATT AAGTCGCACC TCGCGTTGAA AGAGTTAACG GATGAGCTGC GTCGTATGGC CTACCAAGAT GGATTAACCC AAGTCAGTAA TCGGCGTTAT TTCGATGAGT ACCTGTTGCG CCAACAAAAG TTGAGCCAAC GCAGTGGAAG TTTCTTCGCT CTGTTGATGT TCGATATCGA CTTTTTCAAA TATTACAATG ATCACTATGG CCATTTAGCC GGCGACGACT GTTTGCGCTT AGTGGCCAAG GTATTAAAGC AGTCTGTAGA GCGCCCTGGG GACTTCGTTG CTCGGTTCGG TGGGGAGGAA TTCGCAGTTG TACTACCTGA AACCGGCATA GCAGGTGCAA TTCTGGTGGC TACAAAGCTG CTAACGAGTG TGCGTGAGCT GGGAATTAAA CACAAGGGTT CACCCTTTGG TGTGGTCACA GGAAGTATCG GTATAGCGGC TAGTGACGGT GGCAAAAAGA CCCTGCAAGA ATTAATTGAT ACGGCGGATC GGCGTTTGTA TCTCGCTAAA ACCAACGGAC GGGATCAGTT CGCTTCTCAA TAA
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Protein sequence | MLKNAEKARI LIVDDEPINI HVLSNTLTDT YNVFAVTSGR EAIAFCMTHA PDLVLMDMDM PDINGVEACK TLKEKSETHD IPIVFVTGHG DSDAEDKCWE AGGVDFLTKP VNANTLNHRI KSHLALKELT DELRRMAYQD GLTQVSNRRY FDEYLLRQQK LSQRSGSFFA LLMFDIDFFK YYNDHYGHLA GDDCLRLVAK VLKQSVERPG DFVARFGGEE FAVVLPETGI AGAILVATKL LTSVRELGIK HKGSPFGVVT GSIGIAASDG GKKTLQELID TADRRLYLAK TNGRDQFASQ
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