Gene Patl_3669 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3669 
Symbol 
ID4175449 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4425328 
End bp4426230 
Gene Length903 bp 
Protein Length300 aa 
Translation table11 
GC content47% 
IMG OID638056699 
Productdiguanylate cyclase 
Protein accessionYP_663225 
Protein GI109899970 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0119902 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTAAAA ACGCTGAAAA AGCGCGAATA TTAATAGTCG ATGATGAACC GATCAATATT 
CATGTTTTAT CGAACACATT AACGGATACA TACAACGTCT TTGCGGTCAC CTCTGGGCGA
GAAGCGATCG CGTTTTGCAT GACGCACGCC CCTGATCTGG TGTTAATGGA TATGGATATG
CCTGACATCA ACGGCGTAGA AGCCTGTAAA ACGTTAAAAG AAAAAAGTGA AACGCATGAT
ATCCCTATCG TATTCGTGAC AGGGCACGGT GATTCAGATG CGGAAGACAA ATGTTGGGAA
GCAGGCGGCG TTGATTTTTT AACCAAGCCG GTAAACGCCA ATACCTTAAA TCATCGTATT
AAGTCGCACC TCGCGTTGAA AGAGTTAACG GATGAGCTGC GTCGTATGGC CTACCAAGAT
GGATTAACCC AAGTCAGTAA TCGGCGTTAT TTCGATGAGT ACCTGTTGCG CCAACAAAAG
TTGAGCCAAC GCAGTGGAAG TTTCTTCGCT CTGTTGATGT TCGATATCGA CTTTTTCAAA
TATTACAATG ATCACTATGG CCATTTAGCC GGCGACGACT GTTTGCGCTT AGTGGCCAAG
GTATTAAAGC AGTCTGTAGA GCGCCCTGGG GACTTCGTTG CTCGGTTCGG TGGGGAGGAA
TTCGCAGTTG TACTACCTGA AACCGGCATA GCAGGTGCAA TTCTGGTGGC TACAAAGCTG
CTAACGAGTG TGCGTGAGCT GGGAATTAAA CACAAGGGTT CACCCTTTGG TGTGGTCACA
GGAAGTATCG GTATAGCGGC TAGTGACGGT GGCAAAAAGA CCCTGCAAGA ATTAATTGAT
ACGGCGGATC GGCGTTTGTA TCTCGCTAAA ACCAACGGAC GGGATCAGTT CGCTTCTCAA
TAA
 
Protein sequence
MLKNAEKARI LIVDDEPINI HVLSNTLTDT YNVFAVTSGR EAIAFCMTHA PDLVLMDMDM 
PDINGVEACK TLKEKSETHD IPIVFVTGHG DSDAEDKCWE AGGVDFLTKP VNANTLNHRI
KSHLALKELT DELRRMAYQD GLTQVSNRRY FDEYLLRQQK LSQRSGSFFA LLMFDIDFFK
YYNDHYGHLA GDDCLRLVAK VLKQSVERPG DFVARFGGEE FAVVLPETGI AGAILVATKL
LTSVRELGIK HKGSPFGVVT GSIGIAASDG GKKTLQELID TADRRLYLAK TNGRDQFASQ