| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0667 |
|---|
| Symbol | |
|---|
| ID | 3967641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 848025 |
|---|
| End bp | 852605 |
|---|
| Gene Length | 4581 bp |
|---|
| Protein Length | 1526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637919728 |
|---|
| Product | response regulator receiver domain-containing protein |
|---|
| Protein accession | YP_526141 |
|---|
| Protein GI | 90020314 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0280955 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000898802 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTTCG AGTGTAAAAA AAATCGTAAA AAGCTCGAGG TGCGAAGTGT ATTAAAAACT
TGGCTTATTG CAATCTGGTG GTGGTTGGCA GGTATGTATC TGCAAGCTGC TGTTGCCGCG
CCGCCTGCGA GCCTGTCGTT TAATCATATT CTTGCAAGTG AAGTGGAGAG CGTTGGCTAT
GTGGTGTCGA TCGCGCAAGA TAATGACGGT TTTATGTGGT TTGGCGGCGC CAATGGCTTG
GCGCGTTTTG ATGGGTATGA ACTCACTATC TACCGAGCCG GCGAAGGGCA ATCCACACTT
AGCCACAGCT ACATCAACCG TATTCTTATG GCATCTGATG GCCGTATGTG GCTCGCTACA
CGCAACGGTG TAAACCTTTT TAACCCCGCC TTAGATAGTT TTACCGCTTA CCGCTACGAC
GATCAAAATA GCCTTACTCT TAGCGCAAAC GATGTAAACG ATATATTAGA AGATTCTGAA
AAAAGAATGT GGCTAGCTAC GCGCGGAGGC TTTTTTTCGT TTAACCCTGA TACCGGTGCG
TTTACCCATG TGCCTTTTAA ACAGGTATTG GAGCTAGACG CAAAAGCGCA AGCTACCGAC
GAACTTGTTT GGAAGTGCGT ACAGGATAAA AACGGCATTA TTTGGTTGGG CACCCATGCC
TACGGTGTGG TGCAGTTTGA TCCCGCCAGC AACACATTTA AACATTACGC GCATAATAGT
GGCGACGACA ACAGTATTAG TAATAACGAT GTGCGCGAGC TATTTGTCGA TTCCAAAAAT
AATGTGTGGG TTGGCACTTA CGGTAGTGGC TTGCATGTTT ATGATCGCGA GCGCGATCAA
TTTAACCGTT TTGAGCATCA CTCCGAAGAA AAGAGCAACA TCATATGGGA TGTGTTGGAA
GATAGCGCAG GGAATATTTG GATAGGTGAT GGTTCGGCTG CACATGTTCT CGACCCAGTG
ACGGGCGAAT TTTCACGATT TAGGCATTCG GAGAGCGACC CCTCGTCGCC GGGCAACCAT
GTAGTGAATT CCTTGTTTGA GGATAGTGCC GGCGATATGT GGTTAGGTTT TTTCCCATCC
GGGGTGGATG TTGTCGATAA GCAGGCGTCG GCATTTCGCA ATTATCGTCA CAACCCGTCG
AATATAAACA GTGTTGCTTC GGGCGGCATT CTTACTGGCT ATGAAGATAC TAAAGGCAAC
CTATGGGTAG GTGCTGGCTA TGGGCTTAGT TATTTTGATC GAGCCGCTGA GCAATTTAAA
CACTATGTAC ACGACCCAGA AGACTCGGCT AGTTTAAGTG CGAATACAAT TTTATCTGTA
ATAGAAGATA GCCAAGGTAC CCTCTGGGCG GGGGTATGGG CAGGCGGCTT AAATAGATTG
GATGCTGGCA GTAATAGTTT TATTCGATAT TTACCCGAAG AGGGCAATCC TCAATCTCTA
TTAGGGTGGG AGCCTTGGTC TGTAATTGAA AGCCATGATC AAGCTATTTG GATAGCGTCG
GACAAAGGTA TAAGCCGATA TAACCGCGCT ACAGATGACT TCACTCGCTT CGAGCCACCG
CTGAATATGC TAGATGGCGA TAAAAGTTTA TATGCGCGGG TTATTTACGA AGACAGCTTA
AATCAAATTT GGGTAGGGTC CACCCGAGGT CTGTTTAAAC TTACTCCTGC AACAGGTGAG
TTTATTCGTT ATAAGCATAT TGAAGGAGAT ACAACTAGTT TAAGCGCAGA TTTTGTGAAG
TCGGTGTATG AAGATAGCCG CGGTGTATTG TGGGTGGGTA CAGATGGCGG GGGCGTAAAT
AAATTTGATG CAGCCACGCA AACCTTTACT AGTTATACCG TAAAACATGG GCTGCCCAAT
AATGTTGTAA CCGGCATAAT TGAAGATGAC GAAGGCTACC TTTGGTTTAG TACACAAAAA
GGTTTGTCTC GCTTTTTACC GGTTAGTCAA GAAGTGCGAA ACTACTCAAG TAAAGACGGT
TTAGTGGGTA ACCTTTTTAA CAGAAATACG CCAGTTAAAA CGCGCTCGGG CGAATTGTTT
TTTGGTAGTA GTAAAGGCTT TACCTTATTC AACCCGCGCG ACCTAAAAGA AAATGAATAC
TCGCCACCGG TTGTATTAAC CGATCTACAA ATATTTAACG TTCCGGTTAA ATTGGGGCAG
CCAGATTCGC CGCTAACCAA TACATTGCAC TACTCGCAGG CAATCACTTT AGATTATACC
CAATCGGTAT TTATGTTTGA GTTCGCTGCA TTAAATTTTC GCTCGCCAGA AAACAATCAA
TACGCCTATA AATTGGTAGG GTTTGATGGT GGTTGGAACC ACGTAGGAAG TAAGCGTACG
GCAACCTACA CCAACCTCGA CCCAGGCAGC TATCAATTTA AAGTAATAGC GTCGAATAAC
GAAGGTCTGT GGAATACCGA AGGAACATCA ATAAACATTG TTATTTTGCC GCCCTACTGG
AAAACATGGT GGGCTTACAC CCTATATATT ATTTTGTTTA TTGTGCTGCT CACTTGGTTT
ATTCACCAGC AAAGGCAAAA AGTAAGTTTT GAACGACAAA AAGTCGAGCA AGAGCGTTCG
GTGGTTCGAC GATTAAAACA GCTCGACAAG CTTAAAGATG AATTTTTAGC AAATACATCC
CACGAACTGC GTACCCCTCT TAATGGCATT GTTGGGTTAG CCGAATCCTT AATGGATGGC
GTAACAGGCC CGCTTTCCCA CAAAACCAAG CAAAACCTCG CCATGATAGT AAGTAGCGGA
AAACGTTTAG CAGGGTTAGT AGACGACCTG CTCGATTTTG CGCAACTAAA ACATAGGGGC
ATGGCGCTTA ACAAAAAAGC TGTAGATATA CATGTATTGG TAGACGTGGT GCTATCACTT
ACTTTACCCA TTATTGGTGC GAAGCCAATT GAGCTTGTAA ACAATGTAAG TAAACAGTTA
CCTAAAGTTG CGGCAGATGA AAGCAGACTG TTGCAAATAT TGCATAACTT AGTTGGCAAT
GCGGTTAAAT TTACCGATGA GGGCAGCGTT ACCATTAGTG CAGAAGTACA GGGTGAAGAA
ATATGTATAT CCGTTGCTGA TACTGGTATT GGTGTGCCTG AAAATCGTTT TGAAGAAATT
TTTGACTCGT TTAGGCAGCT CGAAGGGGCG TCTAATCGCG TGTATGGTGG AACAGGGTTG
GGGTTATCCG TTACCAAGCA ATTAGTTGAA TTGCACGGCG GTACCATTGG GGTGCGCTCT
ACCCTAGGTA AAGGTGCCAC CTTTTATTTT TATTTACCTC TTAACGCAGC CATAGAAGAT
GAAGCCGATG GCCAAGAGCC GGAAACTAAT AGTGCATACC ATGCTCAGCC ATCCTGCCCT
GAAGAAGAGC TAAACGAGCC GGTAGAAATA AGAGCGCAGG CAGAATCGAA AAGCGATACG
GCGCGTACCT ATCATATTTT AATTGTGGAT GATGAGCCGG TTAATAGGAA AGTATTGGCT
AATTACTTAT CGTTAAAATA CTACACAGTG CACGAAGTGC GATCGGGTAT GGAAGCCATT
ACCTATGTAC GTAATGGGCC AAAAGTCGAT TTAATTCTGC TAGATATAAT GATGCCAAAA
ATGTCTGGTT ACGAAGCGTG TAAACAATTG CGGCAGCAAT ACTCTGCGAA TGAACTTCCC
ATTATTTTAC TTACCGCACG TAGCCAAGTG AGCGATTTGG TTACGGGGTT TAATAGTGGT
GCCAATGATT TTATTACCAA GCCTATTGCC AAAGAAGAGT TACTAGCGCG AGTACATACG
CACTTGCAGC TGCGCGATAT TACCTTGCAC TTAGATTCTA AAGTGGCTGA ACGCACAGCC
GAGTTAGCAG TAAAAAGTGA GAAGCTTGAA GAAACAAAAT TAATTTTGCA GGAGGCAAAT
GACAAGCTCG AACAAGCGAG TTTGACCGAC TCGCTTACTG GGCTGCGCAA CCGTCGCTTT
TTAAATAATT CCATTGTTGC CGATATTGCC ATCGCAAATA GAGCCTACAA GGGGTGGGTA
AAAGGCGACG CGCCGCTTGC TAGCGATCTT ATTTTTATCG TTTTAGATAT TGACTGCTTT
AAAGAAATAA ACGACACCTA TGGGCATAGG TCTGGCGACA GGATGCTCGA ACAAATAAGC
CAGCAGCTAC GCTCTTTGTT GCGCGAATCT GATTATGCTA TTCGTTGGGG GGGGGAGGAG
TTTCTACTTG TTATTCGCTT TGTGGCCAGA GAGGGGGCGG AGGAAGTGGT TGAGCGTATT
CGCAGTACCA TTGAGGCTTT CGAATTCGAG CTTGATAACG GTGAGAAAAT TAAACGCACT
TGCTCAATGG GGTACGCTTG TTACCCATTT ATCCGAGCCG AGCCAACTGC GCTGAGTTGG
GAGCAAGTGA TAGATGGGGC CGACCGCGCG CTTTACATAG CCAAAAGTAG CGGGAGAAAC
TGTTGGGTGG GTATTTCGCA AGGGCCAGCC CCATCGAATG AGCCGCCTGG AGTGTGCCCA
GATTTAGGGC TGCGTGTAAG CCAAGGGGAA TTTGAGTTAA AGGTCTCGGC GAGGGTCAAA
GAGGTGAGTT ACGAAGGTTA G
|
|---|
| Protein sequence | MLFECKKNRK KLEVRSVLKT WLIAIWWWLA GMYLQAAVAA PPASLSFNHI LASEVESVGY
VVSIAQDNDG FMWFGGANGL ARFDGYELTI YRAGEGQSTL SHSYINRILM ASDGRMWLAT
RNGVNLFNPA LDSFTAYRYD DQNSLTLSAN DVNDILEDSE KRMWLATRGG FFSFNPDTGA
FTHVPFKQVL ELDAKAQATD ELVWKCVQDK NGIIWLGTHA YGVVQFDPAS NTFKHYAHNS
GDDNSISNND VRELFVDSKN NVWVGTYGSG LHVYDRERDQ FNRFEHHSEE KSNIIWDVLE
DSAGNIWIGD GSAAHVLDPV TGEFSRFRHS ESDPSSPGNH VVNSLFEDSA GDMWLGFFPS
GVDVVDKQAS AFRNYRHNPS NINSVASGGI LTGYEDTKGN LWVGAGYGLS YFDRAAEQFK
HYVHDPEDSA SLSANTILSV IEDSQGTLWA GVWAGGLNRL DAGSNSFIRY LPEEGNPQSL
LGWEPWSVIE SHDQAIWIAS DKGISRYNRA TDDFTRFEPP LNMLDGDKSL YARVIYEDSL
NQIWVGSTRG LFKLTPATGE FIRYKHIEGD TTSLSADFVK SVYEDSRGVL WVGTDGGGVN
KFDAATQTFT SYTVKHGLPN NVVTGIIEDD EGYLWFSTQK GLSRFLPVSQ EVRNYSSKDG
LVGNLFNRNT PVKTRSGELF FGSSKGFTLF NPRDLKENEY SPPVVLTDLQ IFNVPVKLGQ
PDSPLTNTLH YSQAITLDYT QSVFMFEFAA LNFRSPENNQ YAYKLVGFDG GWNHVGSKRT
ATYTNLDPGS YQFKVIASNN EGLWNTEGTS INIVILPPYW KTWWAYTLYI ILFIVLLTWF
IHQQRQKVSF ERQKVEQERS VVRRLKQLDK LKDEFLANTS HELRTPLNGI VGLAESLMDG
VTGPLSHKTK QNLAMIVSSG KRLAGLVDDL LDFAQLKHRG MALNKKAVDI HVLVDVVLSL
TLPIIGAKPI ELVNNVSKQL PKVAADESRL LQILHNLVGN AVKFTDEGSV TISAEVQGEE
ICISVADTGI GVPENRFEEI FDSFRQLEGA SNRVYGGTGL GLSVTKQLVE LHGGTIGVRS
TLGKGATFYF YLPLNAAIED EADGQEPETN SAYHAQPSCP EEELNEPVEI RAQAESKSDT
ARTYHILIVD DEPVNRKVLA NYLSLKYYTV HEVRSGMEAI TYVRNGPKVD LILLDIMMPK
MSGYEACKQL RQQYSANELP IILLTARSQV SDLVTGFNSG ANDFITKPIA KEELLARVHT
HLQLRDITLH LDSKVAERTA ELAVKSEKLE ETKLILQEAN DKLEQASLTD SLTGLRNRRF
LNNSIVADIA IANRAYKGWV KGDAPLASDL IFIVLDIDCF KEINDTYGHR SGDRMLEQIS
QQLRSLLRES DYAIRWGGEE FLLVIRFVAR EGAEEVVERI RSTIEAFEFE LDNGEKIKRT
CSMGYACYPF IRAEPTALSW EQVIDGADRA LYIAKSSGRN CWVGISQGPA PSNEPPGVCP
DLGLRVSQGE FELKVSARVK EVSYEG
|
|---|
| |