| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg2_1290 |
|---|
| Symbol | pleD |
|---|
| ID | 6980014 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM2304 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011369 |
|---|
| Strand | + |
|---|
| Start bp | 1309698 |
|---|
| End bp | 1311071 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643396007 |
|---|
| Product | response regulator PleD |
|---|
| Protein accession | YP_002280810 |
|---|
| Protein GI | 209548893 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0138689 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00259394 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCGC GAATACTGGT GGTTGACGAT ATTCCGGCCA ATGTGAAGCT GCTCGAAGCG
CGGCTGCTCG CGGAGTATTT CGACGTGATG ACCGCAGCCG ACGGCTATAC GGCGCTGGCG
ATCTGCGAGC GCAACCAGGT CGATCTGATC CTGCTCGACA TCATGATGCC CGGCATAGAC
GGTTTCGAGG TCTGCGAGCG GCTGAAGGCC AACCGCAAGA CCGCCCATAT TCCTGTCGTC
ATGGTTACGG CACTGGATCA GCCGGCCGAT CGCGTCCGCG GCCTGAAGGC CGGCGCCGAC
GATTTCCTCA CCAAACCGGT CAACGATCTT CAGCTGATCT CACGGGTGAA GAGCCTGCTG
CGGCTGAAGA CGTTGAGCGA TGAGTTGCGC ATCCGCGCGG ACACCGCCCA TACGATGGGC
ATCGACGATC TCATGCGGGC AGGCGAGGGC CGCGCCGACG AGACCGGTCA GATCCTGCTC
GTCGACGGCC GCGCCAATTC GCAGGAGCGC ATCATTAAGG CGCTGAAGCC CGTCGCCGAC
GTGCTTGCCC TTTCCGATCC GCAGGCAGCG CTCTTCGAGG CGGCCGAAAG CGCGTTCGAT
CTCGTCATCG TCAACGCCAA TTTCGACGAT TACGATCCGC TGCGCCTCTG CTCGCAGCTG
CGCTCGCTGG AGCGCACCCG CTTTCTGCCG ATCCTGATCA TCACTGAGCA GGGCGCGGAC
GAGATGGTCG TGCGCGCGCT CGATCTCGGC GTCAACGATT ACATCATCCG CCCGGTCGAT
CCCAACGAGC TGGTTGCCCG CAGCCTGACG CAGATCCGTC GCAAGCGCTG CAACGACCGC
CTGCGCGCCA GCGTCAAGCA GACGATCGAG CTTGCCGTGA CCGATCCGCT GACCGGCCTT
TATAACCGGC GTTATCTCGA CAATCACCTG AACGTGCTTT TCAACCGTTC GATGGCGCGG
GGCCGGCCGC TTTCGGTGCT GATCACCGAT ATCGATCGCT TCAAGCAGGT AAACGACACC
TATGGCCATG ACGGCGGCGA CGAAGTGCTG CGGGAGTTTG CCAACCGCGT CCGCTCGACC
ATTCGCGGCG CCGACCTCGC TTGCCGCTAC GGCGGGGAGG AATTCGTCGT CGTCATGCCC
GATACCTCGC CGGAAATTGC CGCCGCTGTT GCCGAGCGCC TGCGCGCGGC CGTCGAAAAC
GCGCCGTTCT TGCTGAAACA TGCGGGAGAG GCGCTGAATG TCACCGCTTC CTTCGGCATC
GCTTCGCGCA TCGGCTCGGT GCTGACCCCG GATCAGCTGA TGAAACAGGC CGATCTTGCG
CTTTACGAGG CCAAGAATAC CGGCCGCAAT CGCGTCGTCG CCGCGGCCGC CTGA
|
|---|
| Protein sequence | MTARILVVDD IPANVKLLEA RLLAEYFDVM TAADGYTALA ICERNQVDLI LLDIMMPGID
GFEVCERLKA NRKTAHIPVV MVTALDQPAD RVRGLKAGAD DFLTKPVNDL QLISRVKSLL
RLKTLSDELR IRADTAHTMG IDDLMRAGEG RADETGQILL VDGRANSQER IIKALKPVAD
VLALSDPQAA LFEAAESAFD LVIVNANFDD YDPLRLCSQL RSLERTRFLP ILIITEQGAD
EMVVRALDLG VNDYIIRPVD PNELVARSLT QIRRKRCNDR LRASVKQTIE LAVTDPLTGL
YNRRYLDNHL NVLFNRSMAR GRPLSVLITD IDRFKQVNDT YGHDGGDEVL REFANRVRST
IRGADLACRY GGEEFVVVMP DTSPEIAAAV AERLRAAVEN APFLLKHAGE ALNVTASFGI
ASRIGSVLTP DQLMKQADLA LYEAKNTGRN RVVAAAA
|
|---|
| |