| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2812 |
|---|
| Symbol | |
|---|
| ID | 4279717 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3384823 |
|---|
| End bp | 3385770 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638135630 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_751490 |
|---|
| Protein GI | 114563976 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTCATAG ATGAGTATAT TTCTGGTGTT GCGCCAATTA GAGGTAAAAT ACTGTTAGTT
GATGATCAAG TTGTGAACAT CAAAATATTG CATCAACTAT TGCAAACGGA TTACGACATT
TATATGGCTC GCGATGGTCA TCAAGCTATT GATATGTGTA AAAAAGTCAA ACCAGATATC
GTGTTGTTAG ATATTGAAAT GCCAATGCTT AATGGATTTG ATGTGTGTGC GCATTTGAAA
AAAGACCCCG ATACAGAAGA TGTCGCCGTT ATTTTTGTGT CAGGTCATTT TGATGAAGAT
AAAGAGGTTA AGGGATTTCA GTTAGGCGCG GTTGATTTTA TTCATAAACC CATTAATCCA
GTTATTACCA AAGCACGCAT TAAAAATCAG ATGATGGCTA AATCTCAAAC TGATTTATTA
CGCTCTATTG CTTTGTTAGA TGGATTAACA GGTTTGGCTA ATCGGCGTAA GTTTGATCAA
GTGCTACCCG TTACCTGGTT ACAATGCGCA CGTGAAAAAC AGCCATTGAC CATTATTTTA
TTGGATATCG ATTTCTTTAA GCATTTTAAT GACACCTACG GCCACACTGA GGGTGATACA
TGTTTACGTG TTGTTGCGCA GAAGATACAA GACACCGTTA ACCGCCCTTA TGACTTAGTT
GCGCGTTATG GCGGTGAAGA GTTTATTTGT GTATTACCTA ACACCGATTT AATTGGTGGC
ACTTATGTGG CTCAGCAAAT TGTTGACAGT ATAGTGTCAT TGAAAATAGC TCATATAAAC
TCACCAATTT CTAAATTTGT TACTGTAAGT GCAGGGGTTT CAACTGTAGT GCCAATGTAT
GATATGCCCA ATAAAATCTT AGTTGAAGCG GCAGATAAAC AATTGTACTT AGCAAAGGAT
CGTGGCAGAA ATAGAGTGTT AGGTTGTTTA GTTGAAGAAA ATACCTAG
|
|---|
| Protein sequence | MFIDEYISGV APIRGKILLV DDQVVNIKIL HQLLQTDYDI YMARDGHQAI DMCKKVKPDI
VLLDIEMPML NGFDVCAHLK KDPDTEDVAV IFVSGHFDED KEVKGFQLGA VDFIHKPINP
VITKARIKNQ MMAKSQTDLL RSIALLDGLT GLANRRKFDQ VLPVTWLQCA REKQPLTIIL
LDIDFFKHFN DTYGHTEGDT CLRVVAQKIQ DTVNRPYDLV ARYGGEEFIC VLPNTDLIGG
TYVAQQIVDS IVSLKIAHIN SPISKFVTVS AGVSTVVPMY DMPNKILVEA ADKQLYLAKD
RGRNRVLGCL VEENT
|
|---|
| |