| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1271 |
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| Symbol | |
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| ID | 3706344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | + |
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| Start bp | 1403259 |
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| End bp | 1407758 |
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| Gene Length | 4500 bp |
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| Protein Length | 1499 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637737773 |
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| Product | hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_343302 |
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| Protein GI | 77164777 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.422796 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAAAGT TATTACAATT TTTTCGAAGA AAAAAAGGAT TTCGCCAGCA ACTTGTGCTG
ACTTTTACTA TTGGAATTAT CTGCTTAGCC CTGCTTTCCT CTTTTGCTAT TTCGACTCTA
TCCAGCCGCA CGGTTCGTAC GACTTTGCTT GAGCAGGGAC GTCGCGCTAC TGAGACTTTT
GCCGCCCAAA GTACGCTCGC CCTGCTTTAC CAGAGCGCCG ATAATGCCAA GGAGGCGGCC
CGTGCAACAC TGGCTTTCCC GGATATTCAA GGGGTAGCTA TTTATGATCC GGAATACCAG
GTATTATTGT CCGAAGGCCA GGAAGCACTG TTACCCGCAG AGCACGCGCT GTGGCCAAGA
ATGTTATGGT TAGAAAGAGA AACGGAAGAT GCTTGGTATT TTGTCGCCCC AGTTTATACC
CGTCAGGGAG GCTCTGATCT AGAGGAGTCG CCATTTTTAG CTAACCCGCC AGAACCAGAA
CTAATTGGTT TTGTACGGGT AATGATGGGT AAAAATACTT TAAAAGCTTT GGCAAGGGAT
ATTCTGCGCA GCAATTTACT GGTGTCTATC ACTCTGGCTA CGGTGCTGCT TCTTCTCTTG
CTTGCGATTA CGGCGCGGAT GACTACGCCG CTTAAAAACC TAGCGGAAAA AATGAAACAG
GCTGAGCTAG GTGAGAAAAA AGTGCGCGCT AAAGTGAATG GGCCAAAAGA TATTATGGAC
ATGGAGGGCG CTTTTAATAC CATGATGACC GTTTTGGAGG CCCGAGAGCA GGAATTGGAA
AAGGCTCGAG ATGCGGCTTT AGAGTCTGCC CGCATTAAAG GAGAGTTTGC TGCTAATGTC
AGCCATGAGA TTCGTACTCC CCTCAATGGG GTTATAGGAA TACTTGAGTT GTTAAAAAAT
ATGGGATTGA ATCCAAAGCA ACGCGAATAC GTACAAGCAG CCTGTAATTC AGGAGAAACT
CTATTAGAAC TTATCGGCAA TATACTGGAT TTTTCTCGTA TCGAGTCGGG AAAATTTAAA
CTTGATCCCA TTAACTTCCA TTTGCAAGAA ATTTTGGATG ATGTTATTGG CTTGCTTGCT
GCTCAAGCTC AGCGGAAAGA GCTAGAATTG GGTTATGTGG TGCTCGATAA TGTGCCTTTA
TCATTGCGGG GAGATTCGGC CCGTATTCGG CAGATACTTA TTAATTTAAT GGCTAATGCA
GTTAAATTCA CTGATCGGGG AGAAGTGTCG ATTGAAGTCA GTCTTCTTGA GAAAAAAGCA
GAAAAACTAG TACTCCATTT TGAAGTTAGA GACACGGGTA TTGGGATTCC GGTAGAGTTT
CGAGCGCGTG TATTCGAGGC TTTTTCCCAA GCAGATAGCT CTACTACCCG TAAATATGGA
GGCACTGGCC TGGGTCTAGC TATCTGCCGC CAATTAGTGG ACTTAATGGG AGGAGACATT
GGCGTAGAGA GTGGTTCCGG CAAAGGAAGT ATTTTTTGGT TTACAGCACC ATTAGAAGAA
ACGTCAGCAC CCCAAGAGTT CCAAGTCTCT AATAAGACTG GGGTAGCTGG ACTACGATTA
TTAATTGTCG ATAACAGCGC GGCAAGTCGC CGTTTTATAG GGCAAACATT TAATGCTTGG
GGAATGTATC ATGGCTGCTC TGAGGATGGG CAGAAGGCGC TTAGAATGCT GCGTAGCGCT
GCGGTTGAAG GCCGGGCTTA TGACCTTGTG CTAGTAGATG AAAATATGCT TGATCTAAAA
GGCTTTAATT TGGCGCATAA GATTACCGAA GATTCTCTAA TTGCGCCCGT TAAGATAATA
CTGATGGGCC ATCAGCACCA TCCCGCTTCT AGTATATCCT CTCTACCCGG TGTGGTAAAT
TATGTGGCTA AGCCAGTGCA ACAATCTTCC TTATATAACG TGATTGTAAG CGCCGTAAAA
CAAAATGAGG CGGCAGTCTC AGAAACTTTA CCCGTGGCCA TAGAAGAAAC GGAATTTTCT
GATCGCCGCA TCTTGGTAGT TGAGGATAAT CGGGTAAATC AGCAGGTAGC CGTTGGGATG
TTGGAGAGAT TTGGTTGCCG AGTTGAGGTG GTGAGTAATG GCCAAGAAGC ACTGGATGCG
ATAGCCAATA AAGTTTATGA GTTAGTGTTA ATGGATTGTC ATATGCCGCA GATGGACGGT
TATGAGGCGA CCCGCCGGAT TAGAGTTCGG GAAGCGGGTA ATAAACAAGT GCCTATTATT
GCTATGACGG CTAATGTTAG GAAGGGTGAC AGTGATAAAT GCATCTCAGC AGGGATGAAT
GATTACTTGC CAAAACCGCT ACGGTTGAGT GTATTGCGAG ATAAATTGCG GCATTGGCTA
GGTACGAGTT CTTCAGATAC AGATTCCGAA AATATTCAAC TAGAAGGCAA GGAGAGCGAA
ACTCCTCTGG ATCTGGTTGC CTTGAATAGA TTTCGTGCCA GCGTTAGCGA TGCTTTTCCT
AGCATGGTTG AAACTTTTAT TGAAGATACT TCGCTTTATT TAGAAGTTTT GCAAAAAGCG
ATCTTCGAGG ACAAAGTCCA TAAGGTAGGG GAAATGGCCC ACAGTGTTAA GGGTAGCGCT
AAGAATTTTG GCGCTAACCG GTTCGCCTCT ATTGCTAAGC AATTAGAAGA TTTGGGACGC
TCTGGTTCTC TGGAAGGAGC CAAGGAACTA TTTACTCAGT TATTCTCTGA ATACTCCTTT
GTTAAAAGGG CATTACAACA AGAAAACGAA TCCAACAAAG AAATCTGTCT CTTTAACAAT
AAAAAAAGAT CACGGGTTCT TATCGTTGAC GATGATCGAA CTATGCGTAT GGCGCTGCGC
AACGTTTTGG AAAAAGGAGG CTATTGGATT GATGAGGCGG TAAACGGCAA TCAGGCGTTG
GAATTTTGTA AACAGCAGAT GCCGGACCTG GTTTTGATGG ATGCGGTCAT GCCCGTATTA
GATGGCTTTA ACGCCTGTGC TCAGATACGG GATTTGCCAG ATAGCAAGCA TACACCGGTG
CTTATTATTA CCGCTTTAGA TGATGATCAT TCCATTGAAA GCGCTTTTTC TGCGGGAGCT
ACCGACTATA TTCCAAAACC GGTGCATTTT TCTGTATTGC GGAAAAGGGT TGCTCGCCTG
CTCGATGCTA GTCGGGCTGA AAAAGATATC CATCAATTAG CTTATCATGA TGTGTTGACA
AGTTTGCCAA ACCGTACCCT GTTTCATAAA CAGCTAGGGG AGTTGATGAA TCGGTCTCAT
TTGAGAGGAG AGCAATTTGC TGTTCTATTC CTTGATTTGG ATCGCTTTAA GCTGGTTAAT
GATACCCTGG GTCATGAGGT GGGCGATTTG CTGCTGAAGG CGGCGGCTGA TCGGATTGTA
GGGTGTCTTC GTTCAAATGA TATGGTGGCC CGGTTAGGAG GAGATGAATT TACAGTTATC
CTGGAAAAAA TAGAATCCCC TCGGGTAGCG GCGGAAGTGG CTGCTAAGAT CTGTAGTGTT
CTCTCTAAAG TATTCGCCTT CTCAGGCCAG GAAATGTATA TCAGTACCAG CATTGGAATT
TCCCTCTATC CTGGTGATGG CGAAGACGTG AGCACGCTCG TCAAACATGC GGATACCGCT
ATGTTCCGCG CTAAAGAGCA AGGCAACAGT TATCAATTTT ATGAAAAGGG CATGGAGACG
GCTGCTGTTA AGCGACTAGG CTTGGAAGCC GAACTTCGCC GGGCATTGGA GCAGAATGAA
CTAGCCCTTT ATTATCAGCC GCAAATAAAT CTTGGCACGG GAGAGATTGC CACCCTGGAA
ACGTTGATAC GCTGGCATCA TCCAGAGCAT GGTTTAATTC CGCCGTCAGA GTTTATTCCC
CTGGCGGAAG AAACCGGGCT TATCGCCTCC ATTGGCGCTT GGATATTACG AGAAGCTTGT
ACCCAAATGC AGTCTTGGCT GCAGCGGGGA TTCGGACCTT TCCATATTGC TGTGAATGTA
TCCGGCCGGG AGTTAGAAAG GGAAGATCTA GTTGATAAGA TTGTAACCAT ACTGAAAGAA
ACAGGCTTGC CTCCAAAGTG GCTAGAGCTT GAAATCACTG AAAGCGTAGT GATGAAAGGC
GCGGGTGCAG CGATACCTAA ATTTCGCCGC TTGAGAGAGA TGGGAATAAA ATTCGCTATT
GATGATTTTG GTACGGGTTA TTCGTCGTTA AATTATCTAA AAAGTTTCCC CGTCGATATA
TTAAAGATTG ACCGTTGTTT TATCCATGAC GTTGTCAGTA ATCCGGATGA TGCTGCAATT
ATCAAAGGTA TTATTGCACT TGCCCATAGC CTGCGGTTGA AAGTGGTTGC GGAAGGGGTG
GAGACCCAGG CCCAGGAAGA ATTTCTTAAA GCGCACCAGT GTGACAGGTT TCAAGGCTTC
TACCTTAGTG AGCCTTTATC AGCGGCCGAG ATTGAACAAG CAATCTTGTC TTGGGGTAGG
GAGAAAGGCT GTTCATCTTT ATCGAAGATA TACCTTTTCC ATTCCAAAGG TACGGCTTAG
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| Protein sequence | MKKLLQFFRR KKGFRQQLVL TFTIGIICLA LLSSFAISTL SSRTVRTTLL EQGRRATETF
AAQSTLALLY QSADNAKEAA RATLAFPDIQ GVAIYDPEYQ VLLSEGQEAL LPAEHALWPR
MLWLERETED AWYFVAPVYT RQGGSDLEES PFLANPPEPE LIGFVRVMMG KNTLKALARD
ILRSNLLVSI TLATVLLLLL LAITARMTTP LKNLAEKMKQ AELGEKKVRA KVNGPKDIMD
MEGAFNTMMT VLEAREQELE KARDAALESA RIKGEFAANV SHEIRTPLNG VIGILELLKN
MGLNPKQREY VQAACNSGET LLELIGNILD FSRIESGKFK LDPINFHLQE ILDDVIGLLA
AQAQRKELEL GYVVLDNVPL SLRGDSARIR QILINLMANA VKFTDRGEVS IEVSLLEKKA
EKLVLHFEVR DTGIGIPVEF RARVFEAFSQ ADSSTTRKYG GTGLGLAICR QLVDLMGGDI
GVESGSGKGS IFWFTAPLEE TSAPQEFQVS NKTGVAGLRL LIVDNSAASR RFIGQTFNAW
GMYHGCSEDG QKALRMLRSA AVEGRAYDLV LVDENMLDLK GFNLAHKITE DSLIAPVKII
LMGHQHHPAS SISSLPGVVN YVAKPVQQSS LYNVIVSAVK QNEAAVSETL PVAIEETEFS
DRRILVVEDN RVNQQVAVGM LERFGCRVEV VSNGQEALDA IANKVYELVL MDCHMPQMDG
YEATRRIRVR EAGNKQVPII AMTANVRKGD SDKCISAGMN DYLPKPLRLS VLRDKLRHWL
GTSSSDTDSE NIQLEGKESE TPLDLVALNR FRASVSDAFP SMVETFIEDT SLYLEVLQKA
IFEDKVHKVG EMAHSVKGSA KNFGANRFAS IAKQLEDLGR SGSLEGAKEL FTQLFSEYSF
VKRALQQENE SNKEICLFNN KKRSRVLIVD DDRTMRMALR NVLEKGGYWI DEAVNGNQAL
EFCKQQMPDL VLMDAVMPVL DGFNACAQIR DLPDSKHTPV LIITALDDDH SIESAFSAGA
TDYIPKPVHF SVLRKRVARL LDASRAEKDI HQLAYHDVLT SLPNRTLFHK QLGELMNRSH
LRGEQFAVLF LDLDRFKLVN DTLGHEVGDL LLKAAADRIV GCLRSNDMVA RLGGDEFTVI
LEKIESPRVA AEVAAKICSV LSKVFAFSGQ EMYISTSIGI SLYPGDGEDV STLVKHADTA
MFRAKEQGNS YQFYEKGMET AAVKRLGLEA ELRRALEQNE LALYYQPQIN LGTGEIATLE
TLIRWHHPEH GLIPPSEFIP LAEETGLIAS IGAWILREAC TQMQSWLQRG FGPFHIAVNV
SGRELEREDL VDKIVTILKE TGLPPKWLEL EITESVVMKG AGAAIPKFRR LREMGIKFAI
DDFGTGYSSL NYLKSFPVDI LKIDRCFIHD VVSNPDDAAI IKGIIALAHS LRLKVVAEGV
ETQAQEEFLK AHQCDRFQGF YLSEPLSAAE IEQAILSWGR EKGCSSLSKI YLFHSKGTA
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