| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oant_3677 |
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| Symbol | pleD |
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| ID | 5382092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ochrobactrum anthropi ATCC 49188 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009668 |
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| Strand | - |
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| Start bp | 1064312 |
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| End bp | 1065697 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640836361 |
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| Product | response regulator PleD |
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| Protein accession | YP_001372212 |
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| Protein GI | 153010998 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00345303 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGCAC GAATTCTCGT CGTTGACGAT GTGGATTCCA ATGTAAAGCT CCTCGAGGCA
AGGCTCCTCT CCGAATATTA TGAGGTTATT ACGGCTTATA GCGGTCCTGA AGCCATTGAG
CTTTGTCTGG GCGGCCAGAT TGACGTCGTT CTTCTAGATA TATTGATGCC GGAGATGGAC
GGTTTTGAAG TGTGTCGTCG ATTGAAAGAT GATCCACGTA CGTCCAATAT TCCTGTTGTG
ATGGTGACGT CGCTCGATGG TGTCGATGAC AAGATTCGCG GCCTTGAAGC TGGCGCCGAC
GACTTTCTGT CAAAGCCCGT CAGCGATCTT CAGTTATTGT CGCGTGTGAA GAGCCTGGCG
CGGCTGAAAC TGGTCTCTGA TGAGCTTTTC CAGCGAACGG GCACGGTTGC GGACGCTGAA
GTGGAAACGC TGCTGGCAAG CAAGATGGGC GGGAATTATG CCGATAAGGA TGAGGTCGCC
CGCATTCTCA TAGTTGATGA GGACGAACTG GCGGCTGCAC GCCTTCGTCT CATTCTTGGA
GAGACCTATC GTGTCGATGT GGCCAGCGAT GCCAACACGG CTTTGATCCG GGCGATAGAT
ACGGATTACG ACAGTATCGT TGTTTCAGCC AACTTCACTT ATTACGATCC GCTGCGCCTT
TGTTCGCAGT TGCGAACCAT TGAACGCACA AGGCTGGTGC CGATCATTCT CGTTGTTCGG
GAAGATGAGG GCGCGCTCGT GGTGCGTGCG CTGGAGCTTG GCGTAAATGA CTATCTGATG
CGTCCGCTTG AGAAGCTGGA GCTGTTTGCG CGCTTGCGAA CCCAGATCAA ACGGAAGTGT
TATAACGATT TACTGCGGCA GAGCCTGAAC CGTACGATCA CCATGGCGGT GACGGATAGT
CTCACAGGGC TGCACAACCG CCGCTATCTC GATACACATA TGCCTGTCCT GCTGACCCGC
GCCATGGGGC GCGAGCGGCC ATTGTCAGTC ATCATGCTCG ACTTCGATCA CTTCAAACGG
ATCAACGACC AGTACGGGCA TGATGCTGGT GACGATGTTC TTCGCGAATT TGCGACGCGC
CTGCGCAAGA ATATTCGTGG GATGGATCTC ATGTGTCGCT ACGGCGGGGA GGAGTTTGTC
GTCGTTCTGC CGGATAGCGA TGTGGAGGCT GCGAAGGCTG TTGCCGAGCG AATCCGGATT
GCTGTGTCAG ACACGCCCTT TGCGGTTGCC AACGGCAAAC ACAAGGTCAA CTTGACCATC
AGTATGGGTG TTGCAGGGCT GAGGCTGATG GGGGATAGCG CTGACGCTCT TTTCTCGAGG
ACAGATGCTG CGCTCTATCA GGCAAAGAAA GGTGGTCGCA ACCGCATTGT CTCTTCGGCA
GCCTGA
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| Protein sequence | MTARILVVDD VDSNVKLLEA RLLSEYYEVI TAYSGPEAIE LCLGGQIDVV LLDILMPEMD
GFEVCRRLKD DPRTSNIPVV MVTSLDGVDD KIRGLEAGAD DFLSKPVSDL QLLSRVKSLA
RLKLVSDELF QRTGTVADAE VETLLASKMG GNYADKDEVA RILIVDEDEL AAARLRLILG
ETYRVDVASD ANTALIRAID TDYDSIVVSA NFTYYDPLRL CSQLRTIERT RLVPIILVVR
EDEGALVVRA LELGVNDYLM RPLEKLELFA RLRTQIKRKC YNDLLRQSLN RTITMAVTDS
LTGLHNRRYL DTHMPVLLTR AMGRERPLSV IMLDFDHFKR INDQYGHDAG DDVLREFATR
LRKNIRGMDL MCRYGGEEFV VVLPDSDVEA AKAVAERIRI AVSDTPFAVA NGKHKVNLTI
SMGVAGLRLM GDSADALFSR TDAALYQAKK GGRNRIVSSA A
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