| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3790 |
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| Symbol | |
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| ID | 4924181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4509675 |
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| End bp | 4510577 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640165416 |
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| Product | response regulator receiver modulated diguanylate cyclase |
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| Protein accession | YP_001095915 |
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| Protein GI | 127514718 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAAGAAC AATCTGTAGT GCTGGTGGTT GATGATGTGA AGACCAATGT GCTGATCATG
AGGCAGTGTC TGAAGGAGAT GTTTCAGGTT TGGACCGCCG ATAGCGGCGA GGAGTGCCTC
AGGGTCGCCA AGCAGAAACC CGACATCATC TTGCTGGATG TGCTGATGCC CGGCATGGAC
GGCTATCAGG TGTGTCGTCA GCTGAAGGCC GACCCCGAGA CCGCCGAGAT CCCCATCATC
TTCGTGACCG CCAAAGACTC GGACGATGAC GAGCAGAAGG GGCTGGAGAT AGGCGCGGTG
GACTATATCA CCAAGCCGAT CCGTCCGGCG ATTGTGCGCG CCCGGGTCAG TACCCATATC
CAACTCAAGC AGCATAGCGA CAAGCTTAAA TTCATGGCGC TGCACGACCA GCTCACCGGC
CTCTACAACC GTCACTTCCT CGCCGAGCGC GCCGCCCAGA GTCTCTCCGC CATGGTGCGG
CACCAGCAGG AGCTCTCCAT CGTGATGCTG GATTTGGATC ACTTCAAGAA GATCAACGAC
TTCAATGGCC ACCATATCGG CGATCTCGTG CTGCAGGCGG TGGCCAAGCT GTTGCAGGAC
TGCTTTCGCA AGGAAGATGT GGTGGCGCGA ATGGGGGGCG AGGAGTTTGT CATCCTGATG
GAGTGCGGCC TGGATATTGC CAGAGAGAAG ACAGAGGATG TGCGTCAGCA ACTGGCACGC
CTCAACCCCA TGGGGCTGGA GGTGACCGGC AGCTTCGGCG TGGTGACTGC CAATCCCCAG
AACGCCGAGC TCTCTCACCT CTTGGTATTG GCAGACGAGG CCGTGTACAA GGCTAAGGCC
GATGGGCGCA ACTGTGTGGT CTGTTATCAG GATGGCGCCT ATCTGACGGT AGAACATGAT
TAA
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| Protein sequence | MEEQSVVLVV DDVKTNVLIM RQCLKEMFQV WTADSGEECL RVAKQKPDII LLDVLMPGMD
GYQVCRQLKA DPETAEIPII FVTAKDSDDD EQKGLEIGAV DYITKPIRPA IVRARVSTHI
QLKQHSDKLK FMALHDQLTG LYNRHFLAER AAQSLSAMVR HQQELSIVML DLDHFKKIND
FNGHHIGDLV LQAVAKLLQD CFRKEDVVAR MGGEEFVILM ECGLDIAREK TEDVRQQLAR
LNPMGLEVTG SFGVVTANPQ NAELSHLLVL ADEAVYKAKA DGRNCVVCYQ DGAYLTVEHD
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