Gene Sama_0748 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0748 
Symbol 
ID4603001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp923436 
End bp924374 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content52% 
IMG OID639780083 
Productresponse regulator receiver protein 
Protein accessionYP_926626 
Protein GI119773886 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAAATC AGGAGCAGCC ATTTAAAGGC TCAGATGATG GACCGCCCAA GGTGCTGATA 
GTTGACGATA AGCCATCCAA CATTCAGATA GTCCATCACA TCATCAAAGA CCAGTACCAG
GTGTTGATGG CCACCTCAGG GAAACGTGCC ATTGAAATAT GCCTGGAGAT GTTGCCTGAC
TTGGTGTTGA TGGATGTCAT CATGCCCGAG CTCAGTGGCC TCGATACCTG CAAGCTGATG
AAGCAGCATC CCGAACTGGT TAATATCCCG GTTATTTTTA TTACTGGCCT GCAAGGTCAA
CATGATGAAA ACGCCTGCTG GGATGCCGGT GGGGTGGATT TTATTTCTAA GCCCTTTAAC
GCTACCACCC TTAAAAATCG CATCAAGGCC CAGGTGACCC TGAAACGCCA GAGTGACTTA
TTGCGTCGGC TGGCGTTTTT GGATGGCCTG ACCGGGGTGA AAAATCGTCA TTTCTTCGAT
CAATATCTCG AGACTCAGCT GATGTTGGCA AGGCGCCAGT CTCAGGCTAT CTGTGTGCTG
ATGGTGGATA TCGACTATTT CAAGCAGTAC AACGACAGTT TTGGTCATCA GATGGGGGAT
GAGGCCTTGC GCTCTGTGGC ACAGGCGCTG GGGGAAAGCT GCAGGCGCCC GGCGGATTTG
GTGGCACGCT ATGGCGGTGA AGAGTTTGTG GTCGTACTGC CCAACACCCC AAAAAACGGG
GTAGAGCGGG TTATTGAACG TATTCAGGGG GCAATCGCCG AGCTGGATAT CCACCACCCG
GCATCGGCAA CCGGCATTCT GACGGTGAGC ATGGGTGGCA TGATTTGGCT TGCCGACTAC
CAAAGCACAG AGGCCCTGCT CGGTGAGGCC GATAAACTAT TGTATCGTGC CAAAAGTCTG
GGGCGAAACC GGGCATGTAT TGATGCCAAT ATCCCTTGA
 
Protein sequence
MINQEQPFKG SDDGPPKVLI VDDKPSNIQI VHHIIKDQYQ VLMATSGKRA IEICLEMLPD 
LVLMDVIMPE LSGLDTCKLM KQHPELVNIP VIFITGLQGQ HDENACWDAG GVDFISKPFN
ATTLKNRIKA QVTLKRQSDL LRRLAFLDGL TGVKNRHFFD QYLETQLMLA RRQSQAICVL
MVDIDYFKQY NDSFGHQMGD EALRSVAQAL GESCRRPADL VARYGGEEFV VVLPNTPKNG
VERVIERIQG AIAELDIHHP ASATGILTVS MGGMIWLADY QSTEALLGEA DKLLYRAKSL
GRNRACIDAN IP