Gene Sde_3005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3005 
Symbol 
ID3967727 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3832998 
End bp3833909 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content48% 
IMG OID637922102 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_528474 
Protein GI90022647 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000288968 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCCACGA ATATTTTAGT TATTGAAGAT AGCCTACCCA CACGCAAGGT TTTGGTGGGA 
GTGGTAGAGA AAATTGGTTA CCGGGCATTG CAGGCCGAAA GTGGCGAGGC TGGGCTAGAG
CTGTTTGCTA CGAATGCGGT AGATATTGTG GTGCTGGATG TGCAGCTGCC GGGCATGGAT
GGTTTTGAAA CCTGCCGCAA AATTCGCGAA GCCAGCGGCG ATGATTGGCT GCCCGTTATT
TACCTTAGTG CCACACACTC CGATGAATAT ATTGTAGAAG GGCTAGAAGC CGGCGGTGAT
GCTTATGTAA CCAAGCCTGT AAACCACACT GTGCTAGAGG CTATTTTAAA AGCCATGGGG
CGCATCGCCC ATATGAAAAA CCAATTAGCG CGGGCAAATA AAGAGTTAAT GAAGCTTGCC
AATCACGATG GGCTTACCAA AATTTTGAAC CGGCGCGGCT TCGATGAGGT GATGGATAGA
TACTGGCGCC AAGCGCGGCG CGACCAAAGT GAAATAGGCT TGCTGTTAAT TGATATCGAT
CATTTTAAAG CTTACAACGA TACCTACGGT CATGTGCGCG GGGATGAAAC GTTAAGTGCT
GTGGCGCATT CAATAGAAAA AGCTTTAATG CGCCCCATTG ATATTGCCGC TCGCTATGGC
GGTGAGGAAT TTGCAGTACT ATTGCCCTGC ACAGGTATGG AAGGTGCTAT GACTGTTGGC
GATAGAATAT TAGAAGCTAT TCGCGACGAA GCTATACCCC ACTTAACGTC CCCGGTTAAA
AGTTTTTTAA CCGTGAGTAT AGGTGTGGCG TTGTCGTCTG GGTTGGCGAG CGCTGAAGAT
TTAATTAAGC GTGCAGATGC GGCATTGTAT CAGGCGAAGG AGAGGGGACG TAATAGGGTT
AATATTGTTT AA
 
Protein sequence
MATNILVIED SLPTRKVLVG VVEKIGYRAL QAESGEAGLE LFATNAVDIV VLDVQLPGMD 
GFETCRKIRE ASGDDWLPVI YLSATHSDEY IVEGLEAGGD AYVTKPVNHT VLEAILKAMG
RIAHMKNQLA RANKELMKLA NHDGLTKILN RRGFDEVMDR YWRQARRDQS EIGLLLIDID
HFKAYNDTYG HVRGDETLSA VAHSIEKALM RPIDIAARYG GEEFAVLLPC TGMEGAMTVG
DRILEAIRDE AIPHLTSPVK SFLTVSIGVA LSSGLASAED LIKRADAALY QAKERGRNRV
NIV