| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3005 |
|---|
| Symbol | |
|---|
| ID | 3967727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3832998 |
|---|
| End bp | 3833909 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637922102 |
|---|
| Product | response regulator receiver modulated diguanylate cyclase |
|---|
| Protein accession | YP_528474 |
|---|
| Protein GI | 90022647 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000288968 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACGA ATATTTTAGT TATTGAAGAT AGCCTACCCA CACGCAAGGT TTTGGTGGGA
GTGGTAGAGA AAATTGGTTA CCGGGCATTG CAGGCCGAAA GTGGCGAGGC TGGGCTAGAG
CTGTTTGCTA CGAATGCGGT AGATATTGTG GTGCTGGATG TGCAGCTGCC GGGCATGGAT
GGTTTTGAAA CCTGCCGCAA AATTCGCGAA GCCAGCGGCG ATGATTGGCT GCCCGTTATT
TACCTTAGTG CCACACACTC CGATGAATAT ATTGTAGAAG GGCTAGAAGC CGGCGGTGAT
GCTTATGTAA CCAAGCCTGT AAACCACACT GTGCTAGAGG CTATTTTAAA AGCCATGGGG
CGCATCGCCC ATATGAAAAA CCAATTAGCG CGGGCAAATA AAGAGTTAAT GAAGCTTGCC
AATCACGATG GGCTTACCAA AATTTTGAAC CGGCGCGGCT TCGATGAGGT GATGGATAGA
TACTGGCGCC AAGCGCGGCG CGACCAAAGT GAAATAGGCT TGCTGTTAAT TGATATCGAT
CATTTTAAAG CTTACAACGA TACCTACGGT CATGTGCGCG GGGATGAAAC GTTAAGTGCT
GTGGCGCATT CAATAGAAAA AGCTTTAATG CGCCCCATTG ATATTGCCGC TCGCTATGGC
GGTGAGGAAT TTGCAGTACT ATTGCCCTGC ACAGGTATGG AAGGTGCTAT GACTGTTGGC
GATAGAATAT TAGAAGCTAT TCGCGACGAA GCTATACCCC ACTTAACGTC CCCGGTTAAA
AGTTTTTTAA CCGTGAGTAT AGGTGTGGCG TTGTCGTCTG GGTTGGCGAG CGCTGAAGAT
TTAATTAAGC GTGCAGATGC GGCATTGTAT CAGGCGAAGG AGAGGGGACG TAATAGGGTT
AATATTGTTT AA
|
|---|
| Protein sequence | MATNILVIED SLPTRKVLVG VVEKIGYRAL QAESGEAGLE LFATNAVDIV VLDVQLPGMD
GFETCRKIRE ASGDDWLPVI YLSATHSDEY IVEGLEAGGD AYVTKPVNHT VLEAILKAMG
RIAHMKNQLA RANKELMKLA NHDGLTKILN RRGFDEVMDR YWRQARRDQS EIGLLLIDID
HFKAYNDTYG HVRGDETLSA VAHSIEKALM RPIDIAARYG GEEFAVLLPC TGMEGAMTVG
DRILEAIRDE AIPHLTSPVK SFLTVSIGVA LSSGLASAED LIKRADAALY QAKERGRNRV
NIV
|
|---|
| |