Gene Dhaf_1561 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_1561 
Symbol 
ID7258530 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand
Start bp1666160 
End bp1667527 
Gene Length1368 bp 
Protein Length455 aa 
Translation table11 
GC content46% 
IMG OID643561467 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_002458047 
Protein GI219667612 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000734361 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAAGACG TTGATATGAA AAATTTTCTG GAAACGATTG AGGATATGAT CCTCATTATT 
AATCGGGAAG GAAGATTATT ATATGCAAAT ACTGCCGTGC CTAAGAAGCT GGGCTATCCT
CATGAAGGAT TAATGAACAT GCATATCCTG ACCATTACCA GCGCCGGTAA GATGGCTGAA
GGTGAAAAGA TCTTAGCTGA GCTGTTTGCG GGCAAAAAAG AAAGTCTCCC TTTGTCCCTG
GAAAAAAAGG AGGGAACCTC CATCCCTGCA AAAGCGCGTA TCTGGCAGGG GAAGTGGCAT
AATGAGCCTT GTCTTTTTGC CATCATTAAG GATTTGTCAA AAGAAGAAAG AGCTTCTTCA
ACCCCATTCC TGGAGCCTGA TGAGATTCAT ACAGGGATCA GCGGGGCGGC TTGGTGCGAA
AAGCCTGATT TCGCCAGCGA TATATCCTGT GAGCTAAAAG ATGAAGAACC CTCCAAACCC
AGAGTGTTAA TCGTGGATGA TCAGCTTTTT AATTTAAAGC TTTTAGAAAG TGCTCTTAAA
GAAGATTACA TCGTGATGAC CGCCGACAAC GGGATTGAGG CCTTAGAGCT GGCCACGGGA
AAAAGCCAGC CCGATATTAT CCTGCTGGAT ATTATTATGC CGGTGATGGA TGGCTATGAG
GTATGCATTC GTCTGCGGGA AATGCCGGAG ACGCGGGATA TTCCGGTAAT TTTCCTTAGC
GCCCTCAAAA ACGAAAAGAA TGAGGAGTAT GCTCTGCAAT TGGGGGTAGT GGATTATATC
ACGAAGCCTT TCAGCTTGCC CATCATCAAA GGCCGGCTCC GAAACCATGT GGAGCAAAAG
AAATACAGGG ATCGGCAAAA AGAAAATAGC TATATTGATG AATTGACGCA AATCGCCAAT
CGCCGGAAAT TCAATGAAAC GGTGACTATA GAGTGGAATC GGGCCAGGCG TAACGGGAAT
AGCTTATCCG TATTGATGAT CGATGTGGAT TGTTTTAAAA AGTACAATGA TTTTTACGGT
CACTTGGAGG GGGATAAATG CCTCTATAAA ATTGCCCAAA CCTTAAAGTC AAATGTAAAG
CGCTCTTCAG ATTTGGTAGC CAGATGGGGC GGGGAAGAGT TTGCCTGCGT TCTTACGGAT
ACGGATCGGA TTGGCGCTAT GCTGGTGGGT GAACGTTTGC GCAGGGCTGT CGTCAAGCTG
AATATCCCAT CCGAAATTTC CGATGTGGAT AGAGTGGTCA CGGCCAGCAT CGGTGTAGCC
ACGGCGTTGC CTTCCGTGGA TAACTCCTTG GAGGAACTGC TGCATAAAGC TGATATGGCT
CTATATAAAG CCAAGAAAAC CGGAAGAAAT TGTGTATGCA CGCCATAA
 
Protein sequence
MEDVDMKNFL ETIEDMILII NREGRLLYAN TAVPKKLGYP HEGLMNMHIL TITSAGKMAE 
GEKILAELFA GKKESLPLSL EKKEGTSIPA KARIWQGKWH NEPCLFAIIK DLSKEERASS
TPFLEPDEIH TGISGAAWCE KPDFASDISC ELKDEEPSKP RVLIVDDQLF NLKLLESALK
EDYIVMTADN GIEALELATG KSQPDIILLD IIMPVMDGYE VCIRLREMPE TRDIPVIFLS
ALKNEKNEEY ALQLGVVDYI TKPFSLPIIK GRLRNHVEQK KYRDRQKENS YIDELTQIAN
RRKFNETVTI EWNRARRNGN SLSVLMIDVD CFKKYNDFYG HLEGDKCLYK IAQTLKSNVK
RSSDLVARWG GEEFACVLTD TDRIGAMLVG ERLRRAVVKL NIPSEISDVD RVVTASIGVA
TALPSVDNSL EELLHKADMA LYKAKKTGRN CVCTP