| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1645 |
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| Symbol | |
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| ID | 5611054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1966518 |
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| End bp | 1967552 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640932515 |
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| Product | hypothetical protein |
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| Protein accession | YP_001473384 |
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| Protein GI | 157374784 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.176846 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAATGC TAATGAAAAG TAACAACCCA AATATATTGA TTGTCGATGA TAAGCTCGAA
AACCTCATAA CATTAGAGCG GTTACTTGAG CACTTTGATG TGGATTTGAT AAGAGCGTCT
TCTGGTAAAG AGGCTTTGGC ACATTTGTTA GATAATGACT TTGCGTTAGT GCTACTGGAC
GTAAAAATGC CAGATATGGA TGGTTACGAA GTCGCCGAAT TAATGCGGGG AAACAGTAGA
ACCAAACAAA TTCCAATTAT TTTCGTTACG GCTGAATCCA GGGGCGACGC ACTGATCTTC
AAAGGGTACG AAGCGGGCGC AGTGGATTAC TTATTGAAGC CACTGAATGC GAGTATTTTT
CGTAGTAAGG TTGGTGTTTT TGTTGATTTA TACAACCAAA AACATGCACT TAAGCTTAAA
ACGTTAGAGT TCGATCAGAA ACTGGCCGAA TTGGAAGAAC TGCAGCAGCA GTTGGAAGAA
ACCAATGAAC AGCTTCTTAT GTTGTCTACA ACGGATGGGT TAACGAGTTT GTATAATCGT
CGTAAATTTG ATGATATTTA CTTGGAAGAA TGGCAACGTG CATCACGCTC ACAAAACCCT
ATTTCTCTGG TAATGTTAGA TATAGACCAT TTTAAACTCT ATAACGATAC CTATGGCCAC
CATAAAGGTG ATGATTGCCT GCGTACTATT GCGAGTGCGC TGCAAGCGAT GGATATACGT
CATTTAGATA AAATTGCAAG AATTGGCGGT GAAGAGTTTG CGGTAATATT GCCAGACACC
GATGGCGATG GTGCAATGTT GGTTGCTGAG CGCGCCCGCA TCGCTATTGA AAATTTGAAT
ATTCCCCACG AGACACAGTT TAGCAAAGTC ACTGCAAGTT TCGGTGTTAG CTCTGTAGTA
CCAAAGCGTG AATTGACCCC AAAATTTCTG ATGAAAGCCG TAGATGAAGC CTTGTATGAA
TCGAAGAAGA GAGGCCGAAA CGGTTCTACA TTAAAGCTTT TAAAATACGG AAAAGAGCAG
CCGTTAGCCA TGTAG
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| Protein sequence | MRMLMKSNNP NILIVDDKLE NLITLERLLE HFDVDLIRAS SGKEALAHLL DNDFALVLLD
VKMPDMDGYE VAELMRGNSR TKQIPIIFVT AESRGDALIF KGYEAGAVDY LLKPLNASIF
RSKVGVFVDL YNQKHALKLK TLEFDQKLAE LEELQQQLEE TNEQLLMLST TDGLTSLYNR
RKFDDIYLEE WQRASRSQNP ISLVMLDIDH FKLYNDTYGH HKGDDCLRTI ASALQAMDIR
HLDKIARIGG EEFAVILPDT DGDGAMLVAE RARIAIENLN IPHETQFSKV TASFGVSSVV
PKRELTPKFL MKAVDEALYE SKKRGRNGST LKLLKYGKEQ PLAM
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