Gene Ssed_1645 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1645 
Symbol 
ID5611054 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1966518 
End bp1967552 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content42% 
IMG OID640932515 
Producthypothetical protein 
Protein accessionYP_001473384 
Protein GI157374784 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.176846 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAATGC TAATGAAAAG TAACAACCCA AATATATTGA TTGTCGATGA TAAGCTCGAA 
AACCTCATAA CATTAGAGCG GTTACTTGAG CACTTTGATG TGGATTTGAT AAGAGCGTCT
TCTGGTAAAG AGGCTTTGGC ACATTTGTTA GATAATGACT TTGCGTTAGT GCTACTGGAC
GTAAAAATGC CAGATATGGA TGGTTACGAA GTCGCCGAAT TAATGCGGGG AAACAGTAGA
ACCAAACAAA TTCCAATTAT TTTCGTTACG GCTGAATCCA GGGGCGACGC ACTGATCTTC
AAAGGGTACG AAGCGGGCGC AGTGGATTAC TTATTGAAGC CACTGAATGC GAGTATTTTT
CGTAGTAAGG TTGGTGTTTT TGTTGATTTA TACAACCAAA AACATGCACT TAAGCTTAAA
ACGTTAGAGT TCGATCAGAA ACTGGCCGAA TTGGAAGAAC TGCAGCAGCA GTTGGAAGAA
ACCAATGAAC AGCTTCTTAT GTTGTCTACA ACGGATGGGT TAACGAGTTT GTATAATCGT
CGTAAATTTG ATGATATTTA CTTGGAAGAA TGGCAACGTG CATCACGCTC ACAAAACCCT
ATTTCTCTGG TAATGTTAGA TATAGACCAT TTTAAACTCT ATAACGATAC CTATGGCCAC
CATAAAGGTG ATGATTGCCT GCGTACTATT GCGAGTGCGC TGCAAGCGAT GGATATACGT
CATTTAGATA AAATTGCAAG AATTGGCGGT GAAGAGTTTG CGGTAATATT GCCAGACACC
GATGGCGATG GTGCAATGTT GGTTGCTGAG CGCGCCCGCA TCGCTATTGA AAATTTGAAT
ATTCCCCACG AGACACAGTT TAGCAAAGTC ACTGCAAGTT TCGGTGTTAG CTCTGTAGTA
CCAAAGCGTG AATTGACCCC AAAATTTCTG ATGAAAGCCG TAGATGAAGC CTTGTATGAA
TCGAAGAAGA GAGGCCGAAA CGGTTCTACA TTAAAGCTTT TAAAATACGG AAAAGAGCAG
CCGTTAGCCA TGTAG
 
Protein sequence
MRMLMKSNNP NILIVDDKLE NLITLERLLE HFDVDLIRAS SGKEALAHLL DNDFALVLLD 
VKMPDMDGYE VAELMRGNSR TKQIPIIFVT AESRGDALIF KGYEAGAVDY LLKPLNASIF
RSKVGVFVDL YNQKHALKLK TLEFDQKLAE LEELQQQLEE TNEQLLMLST TDGLTSLYNR
RKFDDIYLEE WQRASRSQNP ISLVMLDIDH FKLYNDTYGH HKGDDCLRTI ASALQAMDIR
HLDKIARIGG EEFAVILPDT DGDGAMLVAE RARIAIENLN IPHETQFSKV TASFGVSSVV
PKRELTPKFL MKAVDEALYE SKKRGRNGST LKLLKYGKEQ PLAM