Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_4177 |
Symbol | |
ID | 4175966 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 5028969 |
End bp | 5030012 |
Gene Length | 1044 bp |
Protein Length | 347 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638057213 |
Product | diguanylate cyclase |
Protein accession | YP_663730 |
Protein GI | 109900475 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGTAT CTGAATTACG CCCCAACCAG GACATCGAAC CTAGTGCAAC CGCATTGACA GCCGGTACGT CCGTTGCCAA TAGCGAATTG CGCAAGCAAA CCCTAATGGT GGTGGACGAT TATCATTCTA ATTTACAGGC GATGAATGCG CTGTTTGAAT TTCAATACCA AGTTGTTATG TTCGATAACG CAACAGACGC ATTAATACAC GCCCAGCAAG AGTCAGTAGA TTTAATTTTA CTGGATTTAG ACATGCCCGA TATGCACGGC TATGACGCCT GCACTGAATT GAAATCGAAC CCGTTAACCG CGCACATCCC GGTCATCTTC GTCACTGCCT CTGACAGCAC TGACGATGAA GCCCACGGCC TACTGTTAGG CGCTGTAGAT TATATTACCA AGCCGGTTAA TTTGACCATT CTGCGTGCCC GGGTACGCAA TCATATGGAG CTGGTGTACT ACCGTAAGCA ATTAGAAATA TTATCCAGTG TTGATGGCTT AACGGGCGTG GCAAATCGTC GCCAGTTGGA TACAGTATTG TTGCAACACT TTGCATCAAC CATCAGATTT GGTCGCTGTA TGACCTTAAT GATGATCGAT ATTGATGATT TTAAACCGTA CAACGATTTG TACGGCCATA TGCAAGGTGA TGATTGCTTG AAACGTGTAG CTCAGGCTAT CCAATCAGTT CGTCGTAGAG AAACAGATTT CGTCGGTCGC TACGGCGGTG AAGAATTTGC CATGGTGTTG CCTGATACAG ACTTAGATGG TGGGCTTGTG ATGGCCAATA AGCTGTTACA AACCGTCAGG AGCTTAAATA TTGAACATCA AGGGGCAAGT GCAGCCGACA GAGTGACCAT CAGCATAGGG TTGACAGTGT TTGAAGCAAA ACACGAACAA CCGACACAAA TGACAGTGGA AGAGCTGATT GAACTAGCCG ATAGGCAATT GTACGCGGCC AAACATGCTG GCAAAAATCG TGTGAGCCAT TCTCAAATTC CTGAACTTCC AGCCCAATTA AAAAGCGAAA ACGATCATGA ATAA
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Protein sequence | MSVSELRPNQ DIEPSATALT AGTSVANSEL RKQTLMVVDD YHSNLQAMNA LFEFQYQVVM FDNATDALIH AQQESVDLIL LDLDMPDMHG YDACTELKSN PLTAHIPVIF VTASDSTDDE AHGLLLGAVD YITKPVNLTI LRARVRNHME LVYYRKQLEI LSSVDGLTGV ANRRQLDTVL LQHFASTIRF GRCMTLMMID IDDFKPYNDL YGHMQGDDCL KRVAQAIQSV RRRETDFVGR YGGEEFAMVL PDTDLDGGLV MANKLLQTVR SLNIEHQGAS AADRVTISIG LTVFEAKHEQ PTQMTVEELI ELADRQLYAA KHAGKNRVSH SQIPELPAQL KSENDHE
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