Gene Patl_4177 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_4177 
Symbol 
ID4175966 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp5028969 
End bp5030012 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content46% 
IMG OID638057213 
Productdiguanylate cyclase 
Protein accessionYP_663730 
Protein GI109900475 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGTAT CTGAATTACG CCCCAACCAG GACATCGAAC CTAGTGCAAC CGCATTGACA 
GCCGGTACGT CCGTTGCCAA TAGCGAATTG CGCAAGCAAA CCCTAATGGT GGTGGACGAT
TATCATTCTA ATTTACAGGC GATGAATGCG CTGTTTGAAT TTCAATACCA AGTTGTTATG
TTCGATAACG CAACAGACGC ATTAATACAC GCCCAGCAAG AGTCAGTAGA TTTAATTTTA
CTGGATTTAG ACATGCCCGA TATGCACGGC TATGACGCCT GCACTGAATT GAAATCGAAC
CCGTTAACCG CGCACATCCC GGTCATCTTC GTCACTGCCT CTGACAGCAC TGACGATGAA
GCCCACGGCC TACTGTTAGG CGCTGTAGAT TATATTACCA AGCCGGTTAA TTTGACCATT
CTGCGTGCCC GGGTACGCAA TCATATGGAG CTGGTGTACT ACCGTAAGCA ATTAGAAATA
TTATCCAGTG TTGATGGCTT AACGGGCGTG GCAAATCGTC GCCAGTTGGA TACAGTATTG
TTGCAACACT TTGCATCAAC CATCAGATTT GGTCGCTGTA TGACCTTAAT GATGATCGAT
ATTGATGATT TTAAACCGTA CAACGATTTG TACGGCCATA TGCAAGGTGA TGATTGCTTG
AAACGTGTAG CTCAGGCTAT CCAATCAGTT CGTCGTAGAG AAACAGATTT CGTCGGTCGC
TACGGCGGTG AAGAATTTGC CATGGTGTTG CCTGATACAG ACTTAGATGG TGGGCTTGTG
ATGGCCAATA AGCTGTTACA AACCGTCAGG AGCTTAAATA TTGAACATCA AGGGGCAAGT
GCAGCCGACA GAGTGACCAT CAGCATAGGG TTGACAGTGT TTGAAGCAAA ACACGAACAA
CCGACACAAA TGACAGTGGA AGAGCTGATT GAACTAGCCG ATAGGCAATT GTACGCGGCC
AAACATGCTG GCAAAAATCG TGTGAGCCAT TCTCAAATTC CTGAACTTCC AGCCCAATTA
AAAAGCGAAA ACGATCATGA ATAA
 
Protein sequence
MSVSELRPNQ DIEPSATALT AGTSVANSEL RKQTLMVVDD YHSNLQAMNA LFEFQYQVVM 
FDNATDALIH AQQESVDLIL LDLDMPDMHG YDACTELKSN PLTAHIPVIF VTASDSTDDE
AHGLLLGAVD YITKPVNLTI LRARVRNHME LVYYRKQLEI LSSVDGLTGV ANRRQLDTVL
LQHFASTIRF GRCMTLMMID IDDFKPYNDL YGHMQGDDCL KRVAQAIQSV RRRETDFVGR
YGGEEFAMVL PDTDLDGGLV MANKLLQTVR SLNIEHQGAS AADRVTISIG LTVFEAKHEQ
PTQMTVEELI ELADRQLYAA KHAGKNRVSH SQIPELPAQL KSENDHE