Gene Daci_1507 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_1507 
Symbol 
ID5747063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp1689473 
End bp1690399 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content69% 
IMG OID641296587 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_001562536 
Protein GI160896954 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.914031 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTGACG CCCTGACCGG GTCGGAGCTG CCCACGGTCC TCATCGTGGA CGACGAGCGG 
CTGAACCGCA GCATGCTGGC CGAGCTGCTC AGCCCCCACT ACCGAGTGCT GCTGGCCAAG
GACGGCCCTG GCGCCCTGGT GATCGCCCAC CGCGAAGCCC ACCGCCTGCA GCTGATCCTT
CTGGACCTGG CCATGCCCGG CATGAACGGC TACGAGGTGC TGGGTGCGCT GCGCGCGCAG
GAGCGCACCG CCCATATCGC CGTCATCTTC ATCACCGGAC AGAGCAATGC CGAGGCCGAG
GAATACGGCC TGCGCCTGGG CGCGGCCGAC TATGTCTCCA AGCCCATACG CCCCGCCGTG
GTCGAGGTGC GCGTGCGCAA CCAGATACGG CTGGCCCTGC AGCGCCAGGC CCTGGAACGC
CTGGCCATGG TGGACGGGCT GACCGGCCTG GCCAACCGGC GCCACTTCGA CGACGTGCTG
GAGCGCGCCT ACCGCCGCAG CCTGCGCACG GGCGAGCCCG TGGGCCTGGC TCTCATTGAT
ATAGACCACT TCAAGCAATA CAACGACTGC TATGGCCATG TGCAGGGGGA CGAGGCGCTC
AAGGCCGTGG CCGCCACGCT GCAGCGCCAT GCGCGCCGGC CCTACGACCT GGCAGCGCGC
TTTGGCGGCG AGGAATTCGC GCTCATCCTC CCCGGCGAAA GCGATGCGCC GGCCATGGCC
GAGCATTTCC GCCAGGAAGT GCTGCGCCTG TCCATCGCCC ACGCCGCCTC TCCCACGGCG
CCGCAGCTCA CCGTCAGCTG CGGCGTACTC ACCGTGCGGC AGCCGTCTGC CGCGCCTTTG
GAAACCTGGC TGCAGAAGGC GGACGGCCTG CTCTACCAGG CCAAGGCCCA GGGGCGCAAT
CGCATCGAGG CAGCCGTGGA GCCCTGA
 
Protein sequence
MLDALTGSEL PTVLIVDDER LNRSMLAELL SPHYRVLLAK DGPGALVIAH REAHRLQLIL 
LDLAMPGMNG YEVLGALRAQ ERTAHIAVIF ITGQSNAEAE EYGLRLGAAD YVSKPIRPAV
VEVRVRNQIR LALQRQALER LAMVDGLTGL ANRRHFDDVL ERAYRRSLRT GEPVGLALID
IDHFKQYNDC YGHVQGDEAL KAVAATLQRH ARRPYDLAAR FGGEEFALIL PGESDAPAMA
EHFRQEVLRL SIAHAASPTA PQLTVSCGVL TVRQPSAAPL ETWLQKADGL LYQAKAQGRN
RIEAAVEP