Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1684 |
Symbol | |
ID | 4018160 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 1964499 |
End bp | 1965470 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637955695 |
Product | GGDEF domain-containing protein |
Protein accession | YP_562691 |
Protein GI | 91793040 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTAATAG AAGAGTATAT ATCAACCGAT AAACCAGAAC GCGGCAAGAT TTTGCTGGTG GATGACCAAG TCGTCAATAT TAAAATTTTA CACCAACTTC TGCATCAGGA TTATGATATC CATATGGCCA CCGATGGCTT GAAAGCCATA GAAATTTGTG AAAAAATCCA GCCGGATATT ATATTGCTCG ACATTGAAAT GCCCAATTTA AACGGTTTTG ATGTGTGCGC TAAATTAAAA CAGCGGGCAG AAACCCGTAG TATTGCGGTT ATCTTTGTCA CAGGCCATTT CGATTTAGAA AAAGAGGTGC AGGGTTTCCA GCTGGGGGCG GTGGACTTTA TTCACAAACC CATCAACCCA GTGATCACTC AAGCCAGAAT TAAAAATCAG TTCAAGTTGA AGCGTCAGTC TGATTTATTA CGCTCCATAG CCCTGCTTGA TGGCTTAACT GGGGTTGCCA ACCGACGTAA ATTCGAACAG CACACACCGA CAACTTGGCA GCACTGCTTA AGAGATAAGT TACCGATCTC CATCGTTATG TTGGATATCG ACTTTTTTAA GCGTTTTAAT GATTGCTATG GTCACAGCAA AGGGGATGAA TGCCTAAGGA AAGTAGCCCA AACTATCAAT AGCAGGGCAC GGCGGCCTTA CGATCTGGTG GCCCGTTTTG GGGGTGAGGA GTTTATTTGT GTCATGCCCA ATACGGATTT TGATGGCGCC TTGTTCGTTA CTCAGCAAAT TGTGGACAGC ATTATCGCCC TTAAAATACC CCACGAAGGT TCAGATGTGA TGAAGTTTGT CACCATCAGT GCAGGGCTTG CCAGCGTCAT TCCCAGTCAA AACATGGAGC TTCAGGCCCT GATTGAATCT GCAGATAAAC AGCTGTATCG AGCGAAAAGC CAAGGCAGGA ATAGGGTAGA GGCAATCAAT ATCAATGCAA TGGCTGCAGC GCCTGAGCGT ATAGAGGGTT AG
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Protein sequence | MLIEEYISTD KPERGKILLV DDQVVNIKIL HQLLHQDYDI HMATDGLKAI EICEKIQPDI ILLDIEMPNL NGFDVCAKLK QRAETRSIAV IFVTGHFDLE KEVQGFQLGA VDFIHKPINP VITQARIKNQ FKLKRQSDLL RSIALLDGLT GVANRRKFEQ HTPTTWQHCL RDKLPISIVM LDIDFFKRFN DCYGHSKGDE CLRKVAQTIN SRARRPYDLV ARFGGEEFIC VMPNTDFDGA LFVTQQIVDS IIALKIPHEG SDVMKFVTIS AGLASVIPSQ NMELQALIES ADKQLYRAKS QGRNRVEAIN INAMAAAPER IEG
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