Gene Sden_1684 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1684 
Symbol 
ID4018160 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1964499 
End bp1965470 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content45% 
IMG OID637955695 
ProductGGDEF domain-containing protein 
Protein accessionYP_562691 
Protein GI91793040 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTAATAG AAGAGTATAT ATCAACCGAT AAACCAGAAC GCGGCAAGAT TTTGCTGGTG 
GATGACCAAG TCGTCAATAT TAAAATTTTA CACCAACTTC TGCATCAGGA TTATGATATC
CATATGGCCA CCGATGGCTT GAAAGCCATA GAAATTTGTG AAAAAATCCA GCCGGATATT
ATATTGCTCG ACATTGAAAT GCCCAATTTA AACGGTTTTG ATGTGTGCGC TAAATTAAAA
CAGCGGGCAG AAACCCGTAG TATTGCGGTT ATCTTTGTCA CAGGCCATTT CGATTTAGAA
AAAGAGGTGC AGGGTTTCCA GCTGGGGGCG GTGGACTTTA TTCACAAACC CATCAACCCA
GTGATCACTC AAGCCAGAAT TAAAAATCAG TTCAAGTTGA AGCGTCAGTC TGATTTATTA
CGCTCCATAG CCCTGCTTGA TGGCTTAACT GGGGTTGCCA ACCGACGTAA ATTCGAACAG
CACACACCGA CAACTTGGCA GCACTGCTTA AGAGATAAGT TACCGATCTC CATCGTTATG
TTGGATATCG ACTTTTTTAA GCGTTTTAAT GATTGCTATG GTCACAGCAA AGGGGATGAA
TGCCTAAGGA AAGTAGCCCA AACTATCAAT AGCAGGGCAC GGCGGCCTTA CGATCTGGTG
GCCCGTTTTG GGGGTGAGGA GTTTATTTGT GTCATGCCCA ATACGGATTT TGATGGCGCC
TTGTTCGTTA CTCAGCAAAT TGTGGACAGC ATTATCGCCC TTAAAATACC CCACGAAGGT
TCAGATGTGA TGAAGTTTGT CACCATCAGT GCAGGGCTTG CCAGCGTCAT TCCCAGTCAA
AACATGGAGC TTCAGGCCCT GATTGAATCT GCAGATAAAC AGCTGTATCG AGCGAAAAGC
CAAGGCAGGA ATAGGGTAGA GGCAATCAAT ATCAATGCAA TGGCTGCAGC GCCTGAGCGT
ATAGAGGGTT AG
 
Protein sequence
MLIEEYISTD KPERGKILLV DDQVVNIKIL HQLLHQDYDI HMATDGLKAI EICEKIQPDI 
ILLDIEMPNL NGFDVCAKLK QRAETRSIAV IFVTGHFDLE KEVQGFQLGA VDFIHKPINP
VITQARIKNQ FKLKRQSDLL RSIALLDGLT GVANRRKFEQ HTPTTWQHCL RDKLPISIVM
LDIDFFKRFN DCYGHSKGDE CLRKVAQTIN SRARRPYDLV ARFGGEEFIC VMPNTDFDGA
LFVTQQIVDS IIALKIPHEG SDVMKFVTIS AGLASVIPSQ NMELQALIES ADKQLYRAKS
QGRNRVEAIN INAMAAAPER IEG