| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1684 |
|---|
| Symbol | |
|---|
| ID | 4018160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1964499 |
|---|
| End bp | 1965470 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637955695 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | YP_562691 |
|---|
| Protein GI | 91793040 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTAATAG AAGAGTATAT ATCAACCGAT AAACCAGAAC GCGGCAAGAT TTTGCTGGTG
GATGACCAAG TCGTCAATAT TAAAATTTTA CACCAACTTC TGCATCAGGA TTATGATATC
CATATGGCCA CCGATGGCTT GAAAGCCATA GAAATTTGTG AAAAAATCCA GCCGGATATT
ATATTGCTCG ACATTGAAAT GCCCAATTTA AACGGTTTTG ATGTGTGCGC TAAATTAAAA
CAGCGGGCAG AAACCCGTAG TATTGCGGTT ATCTTTGTCA CAGGCCATTT CGATTTAGAA
AAAGAGGTGC AGGGTTTCCA GCTGGGGGCG GTGGACTTTA TTCACAAACC CATCAACCCA
GTGATCACTC AAGCCAGAAT TAAAAATCAG TTCAAGTTGA AGCGTCAGTC TGATTTATTA
CGCTCCATAG CCCTGCTTGA TGGCTTAACT GGGGTTGCCA ACCGACGTAA ATTCGAACAG
CACACACCGA CAACTTGGCA GCACTGCTTA AGAGATAAGT TACCGATCTC CATCGTTATG
TTGGATATCG ACTTTTTTAA GCGTTTTAAT GATTGCTATG GTCACAGCAA AGGGGATGAA
TGCCTAAGGA AAGTAGCCCA AACTATCAAT AGCAGGGCAC GGCGGCCTTA CGATCTGGTG
GCCCGTTTTG GGGGTGAGGA GTTTATTTGT GTCATGCCCA ATACGGATTT TGATGGCGCC
TTGTTCGTTA CTCAGCAAAT TGTGGACAGC ATTATCGCCC TTAAAATACC CCACGAAGGT
TCAGATGTGA TGAAGTTTGT CACCATCAGT GCAGGGCTTG CCAGCGTCAT TCCCAGTCAA
AACATGGAGC TTCAGGCCCT GATTGAATCT GCAGATAAAC AGCTGTATCG AGCGAAAAGC
CAAGGCAGGA ATAGGGTAGA GGCAATCAAT ATCAATGCAA TGGCTGCAGC GCCTGAGCGT
ATAGAGGGTT AG
|
|---|
| Protein sequence | MLIEEYISTD KPERGKILLV DDQVVNIKIL HQLLHQDYDI HMATDGLKAI EICEKIQPDI
ILLDIEMPNL NGFDVCAKLK QRAETRSIAV IFVTGHFDLE KEVQGFQLGA VDFIHKPINP
VITQARIKNQ FKLKRQSDLL RSIALLDGLT GVANRRKFEQ HTPTTWQHCL RDKLPISIVM
LDIDFFKRFN DCYGHSKGDE CLRKVAQTIN SRARRPYDLV ARFGGEEFIC VMPNTDFDGA
LFVTQQIVDS IIALKIPHEG SDVMKFVTIS AGLASVIPSQ NMELQALIES ADKQLYRAKS
QGRNRVEAIN INAMAAAPER IEG
|
|---|
| |