| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1750 |
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| Symbol | pleD |
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| ID | 7386740 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1461199 |
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| End bp | 1462572 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643651060 |
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| Product | response regulator PleD |
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| Protein accession | YP_002549261 |
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| Protein GI | 222148304 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.263569 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CTGATGACAG CCCGTATTCT GGTTGTTGAT GATGTTCCTG CCAATGTGAA GCTGTTGGAA
GCGCGGCTGC TGGCGGAATA TTTCGAGGTA TTGACGGCGG AAGACGGGTT GAAGGCGCTG
GATATCTGCG ACCGCACCCA GGTGGACGTC GTCCTTCTTG ATGTCATGAT GCCAGGCATT
GACGGCTTTG AAGTGTGCGA GCGGCTGAAA TCCAGCCCGC GCACGGCCCA TATTCCCGTG
GTGATGGTCA CGGCACTGGA CCAGCCTTCG GACCGGGTGA GGGGATTGAA GGCTGGCGCT
GACGATTTTC TGACCAAGCC GGTCAACGAT CTGCAACTGA TCTCCCGGGT TAAAAGTCTG
GTGCGTCTGA AAACCCTTTC CGATGAATTG CGCATCCGCG CCGAGACGGC GCAGAAAATG
GGCATAGACA GCAACATTCA TCTCGGCGAC GGTCGTATGG ACGAGGTCGG CCAGGTTCTG
CTGGTCGATA GCCGCGCCAG TTCGCAGGAG CGCATCATCA AGGCGTTGAA GCCTGTGGCC
GATGTTGTTG CGATGTCCGA CGCCCAGGCC GCGCTGTTTG AGGCGGCGGA AAGCAATTTC
GACCTGGTTA TCGTCAATGG CACGCTGGAG GATTACGATC CGCTGCGCCT GTGTTCGCAG
CTGCGGTCGC TGGACCGCAC CCGCTTCATT CCGATTTTGC TGATTGCCGA CCAAGGCGAG
GAATACTTGA TCGTGCGGGC GTTGGATCTG GGCGTCAACG ATTACATTGT CCGGCCGGTC
GACACCAATG AGCTTCTGGC GCGCACGCTG ACCCAGCTAC GCCGCAAACG GTATAATGAC
AGGCTGCGCA GCAGCGTGCA GCAAACCATT GAACTGGCGG TGACCGACGA TCTTACCGGA
CTTCACAATC GGCGCTATCT CGATACCCAC ATCAAAGTGT TGTTCGAGCG CTCCAGTCTG
CGCAAGCAGC CGCTTTCGGT GTGTCTGGTG GATATCGATC GGTTCAAGCT GGTCAATGAC
ACCTATGGCC ATGAGGCGGG CGATGACGTT CTGCGGGAGT TTGCTGCTCG TATTCGCGCT
ACGGTGCGCG GAGCCGATCT TGCCTGCCGC TATGGCGGTG AGGAATTCGT GGTCGTGATG
CCGGATACGT CGCAAGAGAT GGCCGGTACG GTGGCCGAGC GCCTGCGCGA GATGGTAGAG
AAAAAGCCAT TTCGGTTGCA ATCTGGCGGC GAACTGAATG TTACGGCATC GCTTGGCATC
GCTACGGCGG GAGATGAGGT CGCAAGTCCG GAACAATTGT TAAGACAGGC TGACCGCGCG
CTCTATCAGG CCAAAACCGA GGGCCGTAAC AGGGTCGTGT CGGCGGCGGC TTAA
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| Protein sequence | MMTARILVVD DVPANVKLLE ARLLAEYFEV LTAEDGLKAL DICDRTQVDV VLLDVMMPGI
DGFEVCERLK SSPRTAHIPV VMVTALDQPS DRVRGLKAGA DDFLTKPVND LQLISRVKSL
VRLKTLSDEL RIRAETAQKM GIDSNIHLGD GRMDEVGQVL LVDSRASSQE RIIKALKPVA
DVVAMSDAQA ALFEAAESNF DLVIVNGTLE DYDPLRLCSQ LRSLDRTRFI PILLIADQGE
EYLIVRALDL GVNDYIVRPV DTNELLARTL TQLRRKRYND RLRSSVQQTI ELAVTDDLTG
LHNRRYLDTH IKVLFERSSL RKQPLSVCLV DIDRFKLVND TYGHEAGDDV LREFAARIRA
TVRGADLACR YGGEEFVVVM PDTSQEMAGT VAERLREMVE KKPFRLQSGG ELNVTASLGI
ATAGDEVASP EQLLRQADRA LYQAKTEGRN RVVSAAA
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