Gene Avi_1750 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1750 
SymbolpleD 
ID7386740 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp1461199 
End bp1462572 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content58% 
IMG OID643651060 
Productresponse regulator PleD 
Protein accessionYP_002549261 
Protein GI222148304 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.263569 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
CTGATGACAG CCCGTATTCT GGTTGTTGAT GATGTTCCTG CCAATGTGAA GCTGTTGGAA 
GCGCGGCTGC TGGCGGAATA TTTCGAGGTA TTGACGGCGG AAGACGGGTT GAAGGCGCTG
GATATCTGCG ACCGCACCCA GGTGGACGTC GTCCTTCTTG ATGTCATGAT GCCAGGCATT
GACGGCTTTG AAGTGTGCGA GCGGCTGAAA TCCAGCCCGC GCACGGCCCA TATTCCCGTG
GTGATGGTCA CGGCACTGGA CCAGCCTTCG GACCGGGTGA GGGGATTGAA GGCTGGCGCT
GACGATTTTC TGACCAAGCC GGTCAACGAT CTGCAACTGA TCTCCCGGGT TAAAAGTCTG
GTGCGTCTGA AAACCCTTTC CGATGAATTG CGCATCCGCG CCGAGACGGC GCAGAAAATG
GGCATAGACA GCAACATTCA TCTCGGCGAC GGTCGTATGG ACGAGGTCGG CCAGGTTCTG
CTGGTCGATA GCCGCGCCAG TTCGCAGGAG CGCATCATCA AGGCGTTGAA GCCTGTGGCC
GATGTTGTTG CGATGTCCGA CGCCCAGGCC GCGCTGTTTG AGGCGGCGGA AAGCAATTTC
GACCTGGTTA TCGTCAATGG CACGCTGGAG GATTACGATC CGCTGCGCCT GTGTTCGCAG
CTGCGGTCGC TGGACCGCAC CCGCTTCATT CCGATTTTGC TGATTGCCGA CCAAGGCGAG
GAATACTTGA TCGTGCGGGC GTTGGATCTG GGCGTCAACG ATTACATTGT CCGGCCGGTC
GACACCAATG AGCTTCTGGC GCGCACGCTG ACCCAGCTAC GCCGCAAACG GTATAATGAC
AGGCTGCGCA GCAGCGTGCA GCAAACCATT GAACTGGCGG TGACCGACGA TCTTACCGGA
CTTCACAATC GGCGCTATCT CGATACCCAC ATCAAAGTGT TGTTCGAGCG CTCCAGTCTG
CGCAAGCAGC CGCTTTCGGT GTGTCTGGTG GATATCGATC GGTTCAAGCT GGTCAATGAC
ACCTATGGCC ATGAGGCGGG CGATGACGTT CTGCGGGAGT TTGCTGCTCG TATTCGCGCT
ACGGTGCGCG GAGCCGATCT TGCCTGCCGC TATGGCGGTG AGGAATTCGT GGTCGTGATG
CCGGATACGT CGCAAGAGAT GGCCGGTACG GTGGCCGAGC GCCTGCGCGA GATGGTAGAG
AAAAAGCCAT TTCGGTTGCA ATCTGGCGGC GAACTGAATG TTACGGCATC GCTTGGCATC
GCTACGGCGG GAGATGAGGT CGCAAGTCCG GAACAATTGT TAAGACAGGC TGACCGCGCG
CTCTATCAGG CCAAAACCGA GGGCCGTAAC AGGGTCGTGT CGGCGGCGGC TTAA
 
Protein sequence
MMTARILVVD DVPANVKLLE ARLLAEYFEV LTAEDGLKAL DICDRTQVDV VLLDVMMPGI 
DGFEVCERLK SSPRTAHIPV VMVTALDQPS DRVRGLKAGA DDFLTKPVND LQLISRVKSL
VRLKTLSDEL RIRAETAQKM GIDSNIHLGD GRMDEVGQVL LVDSRASSQE RIIKALKPVA
DVVAMSDAQA ALFEAAESNF DLVIVNGTLE DYDPLRLCSQ LRSLDRTRFI PILLIADQGE
EYLIVRALDL GVNDYIVRPV DTNELLARTL TQLRRKRYND RLRSSVQQTI ELAVTDDLTG
LHNRRYLDTH IKVLFERSSL RKQPLSVCLV DIDRFKLVND TYGHEAGDDV LREFAARIRA
TVRGADLACR YGGEEFVVVM PDTSQEMAGT VAERLREMVE KKPFRLQSGG ELNVTASLGI
ATAGDEVASP EQLLRQADRA LYQAKTEGRN RVVSAAA