| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1382 |
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| Symbol | |
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| ID | 5612880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1644899 |
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| End bp | 1645807 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932247 |
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| Product | response regulator receiver protein |
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| Protein accession | YP_001473121 |
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| Protein GI | 157374521 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATGACT TACCAACCAT TTTGATCGTT GATGATACAC GGACCAATAT TCAACTATTG
GCAGGGTGTT TGAAAAAAGA CTATCGGCTA AAAATTGCAA TGAATGGGCA GCGATGTCTC
GAGCTCGCAC GCATAGACCC CCTACCCGAT CTCATTTTAT TGGATGTGGT TATGCCAGAA
ATGGATGGTT ATGAAGTATG TAGAAAGCTT AAGGCTAATC CACATACCCA GCATATTCCC
ATCATCTTCG TTACCGGGAG AGACAGTGAT GATGAAGAGG AGTATGGCCT ACAACTCGGA
GCCGTAGATT ACATCACTAA GCCTATTCGT CCCGCCATCG TTACCGCACG GGTCAGTACT
CAGATCATGT TGAAACAAAA GAGTGATGAG TTGCGCAATA TGGCGCTGCA CGATCAGCTC
ACCCAGCTCT ATAACCGTCA TTTCCTGATC GAAGCCGCCA ATCAAAAAAT GGCAGAATCT
ATCCGGCACA ATAATCCACT GTCGATATTG ATGATAGATA TCGACCATTT CAAGCAGGTT
AACGATCAGT TCGGTCATCA GGCCGGGGAT AGCGTGTTGC AGGCCGTTGC CAAGGCTTTA
GCCGAGAGTA ATCGCAAAGA GGATGTGGTT GCACGTTTCG GTGGGGAGGA ATTTGTTGCC
CTGTTTGAAC ATTGCTCAAT CGATAGTGCC GAGGAGAAGG CTGAGAGGTT GAGGGATAAA
ATTGAACGAT TAATGCCGGC GGGGATCCGC ATTACCGCCA GCTTTGGTGT GGCAGAGCTG
AGACCTAATG AAGAGAGTTT CGAGCAATTA TTGGCACGCG CCGATGAGGC CGTTTATCGC
GCGAAAGAGT TGGGAAGAAA TAGAGTCGTA TCGGCCACGA TTCAGTTAAG TTGTAATGAA
AACTATTAG
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| Protein sequence | MNDLPTILIV DDTRTNIQLL AGCLKKDYRL KIAMNGQRCL ELARIDPLPD LILLDVVMPE
MDGYEVCRKL KANPHTQHIP IIFVTGRDSD DEEEYGLQLG AVDYITKPIR PAIVTARVST
QIMLKQKSDE LRNMALHDQL TQLYNRHFLI EAANQKMAES IRHNNPLSIL MIDIDHFKQV
NDQFGHQAGD SVLQAVAKAL AESNRKEDVV ARFGGEEFVA LFEHCSIDSA EEKAERLRDK
IERLMPAGIR ITASFGVAEL RPNEESFEQL LARADEAVYR AKELGRNRVV SATIQLSCNE
NY
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