Gene VSAL_II0052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_II0052 
Symbol 
ID6962416 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011313 
Strand
Start bp67915 
End bp68814 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content36% 
IMG OID643381381 
Productresponse regulator protein 
Protein accessionYP_002264423 
Protein GI209808885 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.189873 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAAGCG AACAAAAAAT AGTAATTGTT GAAGATGATC CAGTCAGTCG TCAGGTATTG 
CATCATCTAT TAAAGCCGTT ACCGTCCATT TTAACTCAAA ATGGGGCTGA AGCTCTTGAT
GTTATTTTGA ATGAAAGTAT TGATTTGGTC TTACTTGATA TTCATATGCC AGTGATGGGG
GGCTTTGAAG TCATTGAAAG ACTAAAAAAT GACGATAAAA CAAAAGATAT CCCTATCATC
GTTATTACGG TGAATCATTC AAAAGAAGAT GAAATTCGAG CATTAGATTT GGGTGCTGTT
GATTTTATTA CCAAACCGTT TAATGCGGTT ATCTTGCAGA AACGTGTACG TAATCAGTTA
GCTTTAAAAT TGAAATCCGA TTTACTTGAA AAGCACGCGT CATTAGATGG ATTAACGAAT
CTTTTAAACC GCCGCATGTT TGATTTTGAT TTAGAAAGTA AGTGGGCAGA AGGACGCAGG
TTGAAGACCA ACGTTGGGCT TATCATGTTC GATATTGATC ACTTCAAACT TTATAATGAT
AATTATGGTC ATTCGGCAGG TGATGATGTA CTCGTGCGTG TATCTAGAGC TCTAATGGGA
GCTCTACAAA GAAAAACTGA CAGAGTGTAT CGATATGGCG GTGAAGAGTT TACTTTAATT
CAGTTCGATA CCGATGTTGA ACAATTAAAT CAAACCGCAG AATTATTAAG AGAATGTGTT
TATAACTTGA ACATTACTCA TGAGCACTCT TCTTATGGCA AAGTAAGTAT TAGTGTTGGG
GTGGCCTTAA TCGAAAATGA TAATGATCAG TCAGAGTATT CATTATTATT GGCTGCAGAT
GAACAGTTAT ACAAAGCTAA AGATAGAGGA CGTAACTGTA TCGCATCAAT AACGGTATGA
 
Protein sequence
MLSEQKIVIV EDDPVSRQVL HHLLKPLPSI LTQNGAEALD VILNESIDLV LLDIHMPVMG 
GFEVIERLKN DDKTKDIPII VITVNHSKED EIRALDLGAV DFITKPFNAV ILQKRVRNQL
ALKLKSDLLE KHASLDGLTN LLNRRMFDFD LESKWAEGRR LKTNVGLIMF DIDHFKLYND
NYGHSAGDDV LVRVSRALMG ALQRKTDRVY RYGGEEFTLI QFDTDVEQLN QTAELLRECV
YNLNITHEHS SYGKVSISVG VALIENDNDQ SEYSLLLAAD EQLYKAKDRG RNCIASITV