Gene Sama_0065 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0065 
Symbol 
ID4602322 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp70912 
End bp71829 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content54% 
IMG OID639779377 
Productresponse regulator receiver protein 
Protein accessionYP_925947 
Protein GI119773207 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGAGC CTTACACAGT ACTCGTCGTT GACGATGTTA AAACCAACCT GATGATAATG 
GGCCAAAGTC TCAAGGGACT TTACCAAATT CTCGAGGCAA GTAGCGGCGC CCAATGCCTG
AAGCTCGCCC GCAGCGAGCC TCAGCCCGAT CTGATTTTGT TGGACGTGGT AATGCCTGAC
CTCGATGGTT ATGAGGTTTG CAGAGCGCTA AAGAGCGACC CCGCAACCGC TGAGATCCCC
ATCATTTTCG TGACCGGCAA AGACTCTGAT GAAGATGAGC AGTATGGGCT GGAGCTCGGT
GCCGTCGATT ACATCACCAA GCCAATCAGA CCGGCCATAG TGCGCGCCCG GGTCTGCGCC
CACATACAGC TCAAGCAGCA GCGAGACAGG TTGCAGTCAA TGGCGATGCA CGACCAACTC
ACCGGGCTAT ATAACCGTCA CTTTTTGATT GAATGCGCAT CACAACGTTT GGCCAGGGTG
GCACGCCATC GTAATCCCAT GACGCTGGTG TTAATGGATG TGGACCATTT CAAGCGGGTA
AACGATAACT ATGGCCACCA TGTTGGCGAC AAGGTACTGA TTGAGGTTGC CCGCTTGCTC
AGCACCAACA TGCGCCGGGA GGATGTCGTC GCCCGTTTAG GAGGGGAAGA GTTTGTGATG
CTGATGGACT GTAGCCTCGA TAATGCTGCT GCCAAGGTTG AGCATCTGAG ACACCTGCTG
GAGGCTTTAG AGCCAGACGG CATTAAAGTT ACCGGCAGCT TTGGGTTGGT AGAGGCAAGC
CCCTATAACG CTGACTTCTC CCATTTGTTG GTGTTGGCCG ATGATGGGGT GTATCGCGCC
AAAACACAGG GACGAAACTG TGTTGTGTGT CACCGGGCTG AGGCGCCGGC CCTGCGGGGC
AAGGTCTCGA CTGATTAA
 
Protein sequence
MMEPYTVLVV DDVKTNLMIM GQSLKGLYQI LEASSGAQCL KLARSEPQPD LILLDVVMPD 
LDGYEVCRAL KSDPATAEIP IIFVTGKDSD EDEQYGLELG AVDYITKPIR PAIVRARVCA
HIQLKQQRDR LQSMAMHDQL TGLYNRHFLI ECASQRLARV ARHRNPMTLV LMDVDHFKRV
NDNYGHHVGD KVLIEVARLL STNMRREDVV ARLGGEEFVM LMDCSLDNAA AKVEHLRHLL
EALEPDGIKV TGSFGLVEAS PYNADFSHLL VLADDGVYRA KTQGRNCVVC HRAEAPALRG
KVSTD