Gene Cagg_1006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_1006 
Symbol 
ID7268378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp1244185 
End bp1245123 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content54% 
IMG OID643565854 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_002462359 
Protein GI219847926 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAGATA ATCGAACACC TACCATCCTG ATTGTTGACG ATACTCCGGC AAACCTTCTC 
CTATTGACCC AACTATTGGT TGGTCAGTCG TATGACGTGC GCCCGGTGAC CCAAGGCAGG
CAGGCAATAG CGGCAGTTCG CGCAATTCGC CCTGATTTGA TATTACTTGA CATCCGTATG
CCCGATATGG ACGGTTATAC GGTATGTCAA ACCTTAAAAG CCGATCCGGA AACCAACCAG
ATACCGATCA TCTTCATCAG TGCGCTCGAT GACACTGAAG ACAAAGTGCG TGCCTTTGAA
TGTGGAGGTG TCGATTACAT TACGAAACCA TTTCAACCGG CCGAAGTATT AGCGCGTGTA
CGCACGCACC TCGCTTTGGC TCAGGCCCGG ATTGCGCTTG AGACGGCAAA CCGCGAACTG
CAACGAGCAC TTGCACGTGA AGCGGAACTC GCTCGAATTG ACTGGTTGAC CGGTGTCTAC
AATCGTAGCC ATTTTTACGA GCTGGCAACC TACGAATTTG CGATTGCCAC CCGTTACGAT
CAACCACTGG CGATCTGCAT GTTCGATGTC GACCACTTCA AACACATCAA TGACCAATAC
GGTCACCTGA TCGGCGATCA AGTGCTGCGG ACCATTGCCC AAACAGCCGC CCGTCAGATT
CGCACTGCTG ACTGTATCGG TCGTTTTGGC GGTGAAGAGT TTATCCTGCT GTTACCGAAT
ACGACGATGG AGGCCGGACT GAACCTCGCC GAGCGCCTAC GAGTCGCCGT CGCCGCGTTA
GAGATACATA CCGAGAAGGG CACCATCACA GCTACGATCA GTCTAGGCGT AGCCGGGCGC
CAACCGGCCG ATACGATGAT CGAACGGATC ATCGATCGCG CCGATCAAGC CCTCTACGCG
GCTAAGCGGC AGGGGCGCAA TTGTGTGGTG GGGGTGTGA
 
Protein sequence
MPDNRTPTIL IVDDTPANLL LLTQLLVGQS YDVRPVTQGR QAIAAVRAIR PDLILLDIRM 
PDMDGYTVCQ TLKADPETNQ IPIIFISALD DTEDKVRAFE CGGVDYITKP FQPAEVLARV
RTHLALAQAR IALETANREL QRALAREAEL ARIDWLTGVY NRSHFYELAT YEFAIATRYD
QPLAICMFDV DHFKHINDQY GHLIGDQVLR TIAQTAARQI RTADCIGRFG GEEFILLLPN
TTMEAGLNLA ERLRVAVAAL EIHTEKGTIT ATISLGVAGR QPADTMIERI IDRADQALYA
AKRQGRNCVV GV