More than 300 homologs were found in PanDaTox collection
for query gene CPS_0081 on replicon NC_003910
Organism: Colwellia psychrerythraea 34H



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003910  CPS_0081  response regulator/GGDEF domain-containing protein  100 
 
 
419 aa  864    Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3346  response regulator/GGDEF domain-containing protein  46.23 
 
 
417 aa  380  1e-104  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3514  response regulator receiver modulated diguanylate cyclase  43.1 
 
 
427 aa  353  4e-96  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2855  response regulator receiver modulated diguanylate cyclase  42.17 
 
 
415 aa  334  2e-90  Shewanella woodyi ATCC 51908  Bacteria  normal  0.220747  hitchhiker  0.000676798 
 
 
-
 
NC_013512  Sdel_0659  diguanylate cyclase  38.26 
 
 
417 aa  310  2.9999999999999997e-83  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.0149639  n/a   
 
 
-
 
NC_009831  Ssed_1723  diguanylate cyclase  40.48 
 
 
420 aa  306  4.0000000000000004e-82  Shewanella sediminis HAW-EB3  Bacteria  normal  0.428268  hitchhiker  0.00000158997 
 
 
-
 
NC_009783  VIBHAR_03265  hypothetical protein  39.66 
 
 
403 aa  305  9.000000000000001e-82  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011138  MADE_00199  response regulator/GGDEF domain protein  38.01 
 
 
426 aa  305  1.0000000000000001e-81  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_4080  diguanylate cyclase  40.96 
 
 
418 aa  299  8e-80  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1511  response regulator receiver protein  39.13 
 
 
416 aa  298  1e-79  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00466  Putative two-component system regulatory protein with GGDEF domain  36.96 
 
 
414 aa  296  7e-79  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.6149  n/a   
 
 
-
 
NC_011138  MADE_03374  Response regulator containing a CheY-like receiver domain and a GGDEF domain  39.95 
 
 
419 aa  293  4e-78  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.67607  n/a   
 
 
-
 
NC_009901  Spea_1684  response regulator receiver modulated diguanylate cyclase  38.85 
 
 
400 aa  291  2e-77  Shewanella pealeana ATCC 700345  Bacteria  normal  0.16221  n/a   
 
 
-
 
NC_012850  Rleg_2407  response regulator receiver modulated diguanylate cyclase  38.35 
 
 
443 aa  284  2.0000000000000002e-75  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0296488 
 
 
-
 
NC_007575  Suden_1780  diguanylate cyclase  38.69 
 
 
414 aa  283  3.0000000000000004e-75  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0581  response regulator  37.89 
 
 
417 aa  283  4.0000000000000003e-75  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000040809  n/a   
 
 
-
 
NC_008345  Sfri_2466  diguanylate cyclase  37.9 
 
 
406 aa  280  3e-74  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0503371  n/a   
 
 
-
 
NC_007643  Rru_A0085  response regulator receiver modulated diguanylate cyclase  38.37 
 
 
453 aa  278  2e-73  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1984  threonine dehydratase  35.35 
 
 
418 aa  276  5e-73  Campylobacter concisus 13826  Bacteria  normal  0.241676  n/a   
 
 
-
 
NC_009715  CCV52592_0462  3-deoxy-d-manno-octulosonic-acid transferase  36.14 
 
 
422 aa  276  6e-73  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2518  GGDEF domain-containing protein  37.38 
 
 
407 aa  273  3e-72  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2153  response regulator receiver modulated diguanylate cyclase  38.11 
 
 
443 aa  267  2e-70  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.257798  normal  0.276429 
 
 
-
 
NC_009439  Pmen_0478  response regulator receiver modulated diguanylate cyclase  36.3 
 
 
422 aa  264  2e-69  Pseudomonas mendocina ymp  Bacteria  normal  0.60604  normal 
 
 
-
 
NC_008599  CFF8240_1193  diguanylate cyclase  35.75 
 
 
415 aa  262  8.999999999999999e-69  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1334  response regulator receiver modulated diguanylate cyclase  35.27 
 
 
447 aa  258  2e-67  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_0621  response regulator receiver modulated diguanylate cyclase  34.31 
 
 
415 aa  254  1.0000000000000001e-66  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.649156 
 
 
-
 
NC_008751  Dvul_2323  response regulator receiver modulated diguanylate cyclase  36.12 
 
 
445 aa  254  2.0000000000000002e-66  Desulfovibrio vulgaris DP4  Bacteria  normal  0.123075  unclonable  0.0000172862 
 
 
-
 
NC_009654  Mmwyl1_1933  response regulator receiver modulated diguanylate cyclase  35.35 
 
 
411 aa  239  6.999999999999999e-62  Marinomonas sp. MWYL1  Bacteria  normal  0.380329  normal 
 
 
-
 
NC_008789  Hhal_2233  response regulator receiver modulated diguanylate cyclase  34.3 
 
 
428 aa  233  5e-60  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0579  response regulator receiver sensor signal transduction histidine kinase  39.73 
 
 
487 aa  186  5e-46  Desulfovibrio vulgaris DP4  Bacteria  normal  0.721447  normal 
 
 
-
 
NC_003912  CJE0746  response regulator/GGDEF domain-containing protein  27.88 
 
 
414 aa  185  2.0000000000000003e-45  Campylobacter jejuni RM1221  Bacteria  normal  0.0447686  n/a   
 
 
-
 
NC_008787  CJJ81176_0671  response regulator/GGDEF domain-containing protein  27.88 
 
 
414 aa  185  2.0000000000000003e-45  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1356  response regulator/GGDEF domain-containing protein  27.64 
 
 
414 aa  184  3e-45  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1131  response regulator receiver sensor signal transduction histidine kinase  40.36 
 
 
500 aa  183  4.0000000000000006e-45  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_012039  Cla_0652  two component response regulator  28.4 
 
 
414 aa  177  3e-43  Campylobacter lari RM2100  Bacteria  normal  0.267728  n/a   
 
 
-
 
NC_007519  Dde_0180  response regulator receiver domain-containing protein  37.4 
 
 
273 aa  171  2e-41  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2852  response regulator receiver protein  39.11 
 
 
268 aa  171  3e-41  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2154  response regulator receiver protein  36.9 
 
 
268 aa  169  1e-40  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.193377  normal  0.527206 
 
 
-
 
NC_007519  Dde_0178  response regulator receiver domain-containing protein  34.88 
 
 
272 aa  167  2.9999999999999998e-40  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1795  response regulator receiver protein  34.24 
 
 
274 aa  166  9e-40  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00918371  hitchhiker  0.000651153 
 
 
-
 
NC_012850  Rleg_2408  response regulator receiver protein  36.25 
 
 
276 aa  165  2.0000000000000002e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.10805 
 
 
-
 
NC_011989  Avi_2726  two component response regulator  37.5 
 
 
277 aa  162  1e-38  Agrobacterium vitis S4  Bacteria  normal  0.54081  n/a   
 
 
-
 
NC_011769  DvMF_1937  response regulator receiver protein  38.82 
 
 
269 aa  162  1e-38  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008576  Mmc1_3271  PAS/PAC sensor hybrid histidine kinase  35.74 
 
 
1691 aa  158  2e-37  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2313  response regulator  33.44 
 
 
301 aa  155  1e-36  Geobacter sulfurreducens PCA  Bacteria  normal  0.483613  n/a   
 
 
-
 
NC_013223  Dret_0825  response regulator receiver modulated serine phosphatase  31.18 
 
 
526 aa  150  3e-35  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.126425  normal  0.339318 
 
 
-
 
NC_008609  Ppro_1341  response regulator receiver modulated diguanylate cyclase  32.56 
 
 
319 aa  150  4e-35  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1507  response regulator receiver modulated diguanylate cyclase  35.02 
 
 
308 aa  149  9e-35  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.914031 
 
 
-
 
NC_008789  Hhal_0365  response regulator receiver modulated diguanylate cyclase  30.52 
 
 
308 aa  146  8.000000000000001e-34  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3614  response regulator receiver modulated diguanylate cyclase  31.46 
 
 
310 aa  144  2e-33  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  31.68 
 
 
308 aa  144  3e-33  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  31.68 
 
 
308 aa  144  3e-33  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007517  Gmet_0069  response regulator receiver modulated diguanylate cyclase  32.57 
 
 
314 aa  144  3e-33  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.840661 
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  32.12 
 
 
322 aa  144  3e-33  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_010424  Daud_1846  response regulator receiver modulated diguanylate cyclase  32.23 
 
 
314 aa  144  4e-33  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3473  response regulator receiver modulated diguanylate cyclase  33.54 
 
 
351 aa  142  9e-33  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3625  response regulator receiver modulated diguanylate cyclase  33.97 
 
 
322 aa  141  1.9999999999999998e-32  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2023  response regulator receiver modulated diguanylate cyclase  31.8 
 
 
312 aa  141  1.9999999999999998e-32  Marinomonas sp. MWYL1  Bacteria  normal  0.174701  normal 
 
 
-
 
NC_010505  Mrad2831_0755  response regulator receiver modulated diguanylate cyclase  34.26 
 
 
298 aa  141  1.9999999999999998e-32  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.893944 
 
 
-
 
NC_011145  AnaeK_3557  response regulator receiver modulated diguanylate cyclase  34.08 
 
 
322 aa  141  1.9999999999999998e-32  Anaeromyxobacter sp. K  Bacteria  normal  0.457648  n/a   
 
 
-
 
NC_013522  Taci_0157  response regulator receiver modulated diguanylate cyclase  32.12 
 
 
917 aa  139  6e-32  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0115  response regulator receiver modulated diguanylate cyclase  31.96 
 
 
304 aa  139  8.999999999999999e-32  Pelobacter propionicus DSM 2379  Bacteria  normal  0.113218  n/a   
 
 
-
 
NC_010725  Mpop_1933  response regulator receiver modulated diguanylate cyclase  33.22 
 
 
298 aa  139  1e-31  Methylobacterium populi BJ001  Bacteria  normal  0.964426  normal  0.0629546 
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  31.68 
 
 
317 aa  138  2e-31  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1978  diguanylate cyclase  33.11 
 
 
298 aa  136  7.000000000000001e-31  Methylobacterium extorquens PA1  Bacteria  normal  0.148602  normal 
 
 
-
 
NC_008577  Shewana3_2212  response regulator receiver modulated diguanylate cyclase  28.1 
 
 
543 aa  136  9e-31  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1484  response regulator receiver modulated diguanylate cyclase  28.9 
 
 
555 aa  135  9.999999999999999e-31  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.0158649 
 
 
-
 
NC_008346  Swol_0600  response regulator receiver protein  31.42 
 
 
301 aa  135  9.999999999999999e-31  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_2255  response regulator receiver modulated diguanylate cyclase  33.11 
 
 
298 aa  135  1.9999999999999998e-30  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1332  response regulator receiver modulated diguanylate cyclase  32.34 
 
 
306 aa  135  1.9999999999999998e-30  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2087  response regulator receiver modulated diguanylate cyclase  28.44 
 
 
544 aa  134  3e-30  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0195  response regulator receiver modulated diguanylate cyclase  33.66 
 
 
309 aa  134  3e-30  Geobacter uraniireducens Rf4  Bacteria  normal  0.0106599  n/a   
 
 
-
 
NC_008322  Shewmr7_1887  response regulator receiver modulated diguanylate cyclase  28.44 
 
 
544 aa  134  3e-30  Shewanella sp. MR-7  Bacteria  normal  normal  0.374169 
 
 
-
 
NC_008740  Maqu_3442  response regulator receiver modulated diguanylate cyclase  30.03 
 
 
539 aa  133  6e-30  Marinobacter aquaeolei VT8  Bacteria  normal  0.677434  n/a   
 
 
-
 
NC_004578  PSPTO_4837  response regulator  30.66 
 
 
551 aa  133  6.999999999999999e-30  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.978785  n/a   
 
 
-
 
NC_009831  Ssed_1382  response regulator receiver protein  30.95 
 
 
302 aa  132  9e-30  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3376  GGDEF/response regulator receiver domain-containing protein  32.45 
 
 
308 aa  132  1.0000000000000001e-29  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2951  response regulator receiver modulated diguanylate cyclase  31.68 
 
 
306 aa  132  1.0000000000000001e-29  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013161  Cyan8802_2067  response regulator receiver modulated diguanylate cyclase  31.8 
 
 
317 aa  132  1.0000000000000001e-29  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2041  response regulator receiver modulated diguanylate cyclase  31.8 
 
 
317 aa  132  1.0000000000000001e-29  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  31.02 
 
 
337 aa  132  2.0000000000000002e-29  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_009485  BBta_4746  response regulator PleD  28.97 
 
 
466 aa  131  2.0000000000000002e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0979514  normal  0.753316 
 
 
-
 
NC_007005  Psyr_4377  GGDEF  31.01 
 
 
551 aa  130  3e-29  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2032  response regulator receiver modulated diguanylate cyclase  30.77 
 
 
310 aa  131  3e-29  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3123  response regulator receiver modulated diguanylate cyclase  31.7 
 
 
312 aa  131  3e-29  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0623  response regulator receiver modulated diguanylate cyclase  31.36 
 
 
556 aa  130  4.0000000000000003e-29  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.322116  normal 
 
 
-
 
NC_011662  Tmz1t_3851  response regulator receiver modulated diguanylate cyclase  31.09 
 
 
634 aa  130  6e-29  Thauera sp. MZ1T  Bacteria  normal  0.0571122  n/a   
 
 
-
 
NC_010814  Glov_2955  response regulator receiver modulated diguanylate cyclase  32 
 
 
308 aa  129  7.000000000000001e-29  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  30.84 
 
 
312 aa  129  7.000000000000001e-29  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05729  putative diguanylate cyclase  30.22 
 
 
323 aa  129  8.000000000000001e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007925  RPC_3308  response regulator PleD  27.92 
 
 
457 aa  129  8.000000000000001e-29  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.268667  normal 
 
 
-
 
NC_008347  Mmar10_0119  response regulator receiver modulated diguanylate cyclase  31.73 
 
 
324 aa  129  8.000000000000001e-29  Maricaulis maris MCS10  Bacteria  normal  0.969085  normal 
 
 
-
 
NC_002939  GSU1643  GGDEF/response regulator receiver domain-containing protein  30.1 
 
 
316 aa  129  9.000000000000001e-29  Geobacter sulfurreducens PCA  Bacteria  normal  0.176359  n/a   
 
 
-
 
NC_010506  Swoo_1513  response regulator receiver modulated diguanylate cyclase  31.61 
 
 
301 aa  129  9.000000000000001e-29  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0153071 
 
 
-
 
NC_009439  Pmen_0723  response regulator receiver modulated diguanylate cyclase  31.21 
 
 
540 aa  128  1.0000000000000001e-28  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2127  response regulator  28.32 
 
 
544 aa  129  1.0000000000000001e-28  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007778  RPB_2413  response regulator PleD  27.43 
 
 
457 aa  129  1.0000000000000001e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.592932  normal  0.173821 
 
 
-
 
NC_011901  Tgr7_2459  response regulator receiver modulated diguanylate cyclase  29.94 
 
 
335 aa  128  2.0000000000000002e-28  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.685644  n/a   
 
 
-
 
NC_007912  Sde_2463  response regulator receiver modulated diguanylate cyclase  31.13 
 
 
301 aa  128  2.0000000000000002e-28  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1554  response regulator receiver modulated diguanylate cyclase  28.49 
 
 
419 aa  127  3e-28  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
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