More than 300 homologs were found in PanDaTox collection
for query gene Sama_1511 on replicon NC_008700
Organism: Shewanella amazonensis SB2B



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008700  Sama_1511  response regulator receiver protein  100 
 
 
416 aa  848    Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1723  diguanylate cyclase  64.96 
 
 
420 aa  553  1e-156  Shewanella sediminis HAW-EB3  Bacteria  normal  0.428268  hitchhiker  0.00000158997 
 
 
-
 
NC_010506  Swoo_2855  response regulator receiver modulated diguanylate cyclase  64.15 
 
 
415 aa  543  1e-153  Shewanella woodyi ATCC 51908  Bacteria  normal  0.220747  hitchhiker  0.000676798 
 
 
-
 
NC_009901  Spea_1684  response regulator receiver modulated diguanylate cyclase  61.85 
 
 
400 aa  507  9.999999999999999e-143  Shewanella pealeana ATCC 700345  Bacteria  normal  0.16221  n/a   
 
 
-
 
NC_008345  Sfri_2466  diguanylate cyclase  56.45 
 
 
406 aa  473  1e-132  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0503371  n/a   
 
 
-
 
NC_007954  Sden_2518  GGDEF domain-containing protein  55.66 
 
 
407 aa  466  9.999999999999999e-131  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1780  diguanylate cyclase  40.53 
 
 
414 aa  328  1.0000000000000001e-88  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0659  diguanylate cyclase  39.9 
 
 
417 aa  319  7e-86  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.0149639  n/a   
 
 
-
 
NC_011138  MADE_03374  Response regulator containing a CheY-like receiver domain and a GGDEF domain  43.3 
 
 
419 aa  311  1e-83  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.67607  n/a   
 
 
-
 
NC_003910  CPS_0081  response regulator/GGDEF domain-containing protein  39.37 
 
 
419 aa  306  5.0000000000000004e-82  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1933  response regulator receiver modulated diguanylate cyclase  42.27 
 
 
411 aa  305  9.000000000000001e-82  Marinomonas sp. MWYL1  Bacteria  normal  0.380329  normal 
 
 
-
 
NC_009439  Pmen_0478  response regulator receiver modulated diguanylate cyclase  42.27 
 
 
422 aa  303  5.000000000000001e-81  Pseudomonas mendocina ymp  Bacteria  normal  0.60604  normal 
 
 
-
 
NC_009715  CCV52592_0462  3-deoxy-d-manno-octulosonic-acid transferase  39 
 
 
422 aa  301  2e-80  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1984  threonine dehydratase  39.33 
 
 
418 aa  299  5e-80  Campylobacter concisus 13826  Bacteria  normal  0.241676  n/a   
 
 
-
 
NC_007912  Sde_0621  response regulator receiver modulated diguanylate cyclase  40.98 
 
 
415 aa  298  9e-80  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.649156 
 
 
-
 
NC_008599  CFF8240_1193  diguanylate cyclase  37.53 
 
 
415 aa  296  3e-79  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0085  response regulator receiver modulated diguanylate cyclase  40.33 
 
 
453 aa  296  6e-79  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00466  Putative two-component system regulatory protein with GGDEF domain  39.61 
 
 
414 aa  290  3e-77  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.6149  n/a   
 
 
-
 
NC_012850  Rleg_2407  response regulator receiver modulated diguanylate cyclase  36.96 
 
 
443 aa  282  6.000000000000001e-75  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0296488 
 
 
-
 
NC_008228  Patl_4080  diguanylate cyclase  38.57 
 
 
418 aa  280  2e-74  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0581  response regulator  39.09 
 
 
417 aa  277  3e-73  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000040809  n/a   
 
 
-
 
NC_009783  VIBHAR_03265  hypothetical protein  39.66 
 
 
403 aa  275  2.0000000000000002e-72  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011071  Smal_1334  response regulator receiver modulated diguanylate cyclase  39.66 
 
 
447 aa  274  2.0000000000000002e-72  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3346  response regulator/GGDEF domain-containing protein  37.26 
 
 
417 aa  270  5e-71  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2153  response regulator receiver modulated diguanylate cyclase  36.96 
 
 
443 aa  266  4e-70  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.257798  normal  0.276429 
 
 
-
 
NC_008751  Dvul_2323  response regulator receiver modulated diguanylate cyclase  37.59 
 
 
445 aa  263  4e-69  Desulfovibrio vulgaris DP4  Bacteria  normal  0.123075  unclonable  0.0000172862 
 
 
-
 
NC_010506  Swoo_3514  response regulator receiver modulated diguanylate cyclase  35.42 
 
 
427 aa  253  4.0000000000000004e-66  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_00199  response regulator/GGDEF domain protein  35.95 
 
 
426 aa  243  3.9999999999999997e-63  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_2233  response regulator receiver modulated diguanylate cyclase  35.39 
 
 
428 aa  227  3e-58  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE0746  response regulator/GGDEF domain-containing protein  31.95 
 
 
414 aa  222  9.999999999999999e-57  Campylobacter jejuni RM1221  Bacteria  normal  0.0447686  n/a   
 
 
-
 
NC_008787  CJJ81176_0671  response regulator/GGDEF domain-containing protein  31.95 
 
 
414 aa  222  9.999999999999999e-57  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1356  response regulator/GGDEF domain-containing protein  31.71 
 
 
414 aa  218  1e-55  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0652  two component response regulator  32.85 
 
 
414 aa  216  5e-55  Campylobacter lari RM2100  Bacteria  normal  0.267728  n/a   
 
 
-
 
NC_008751  Dvul_2852  response regulator receiver protein  42.68 
 
 
268 aa  194  2e-48  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0178  response regulator receiver domain-containing protein  40.56 
 
 
272 aa  192  8e-48  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1131  response regulator receiver sensor signal transduction histidine kinase  38.49 
 
 
500 aa  191  1e-47  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008751  Dvul_0579  response regulator receiver sensor signal transduction histidine kinase  39.38 
 
 
487 aa  189  8e-47  Desulfovibrio vulgaris DP4  Bacteria  normal  0.721447  normal 
 
 
-
 
NC_007519  Dde_0180  response regulator receiver domain-containing protein  38.52 
 
 
273 aa  182  1e-44  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2154  response regulator receiver protein  36.76 
 
 
268 aa  174  1.9999999999999998e-42  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.193377  normal  0.527206 
 
 
-
 
NC_011769  DvMF_1937  response regulator receiver protein  40.73 
 
 
269 aa  172  6.999999999999999e-42  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011989  Avi_2726  two component response regulator  37.3 
 
 
277 aa  172  6.999999999999999e-42  Agrobacterium vitis S4  Bacteria  normal  0.54081  n/a   
 
 
-
 
NC_012850  Rleg_2408  response regulator receiver protein  35.97 
 
 
276 aa  172  7.999999999999999e-42  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.10805 
 
 
-
 
NC_008346  Swol_0600  response regulator receiver protein  34.01 
 
 
301 aa  171  2e-41  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3271  PAS/PAC sensor hybrid histidine kinase  39.75 
 
 
1691 aa  171  2e-41  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_1795  response regulator receiver protein  36.58 
 
 
274 aa  165  2.0000000000000002e-39  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00918371  hitchhiker  0.000651153 
 
 
-
 
NC_013223  Dret_0825  response regulator receiver modulated serine phosphatase  36.89 
 
 
526 aa  163  6e-39  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.126425  normal  0.339318 
 
 
-
 
NC_010424  Daud_1846  response regulator receiver modulated diguanylate cyclase  34.68 
 
 
314 aa  162  1e-38  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2313  response regulator  34.77 
 
 
301 aa  159  6e-38  Geobacter sulfurreducens PCA  Bacteria  normal  0.483613  n/a   
 
 
-
 
NC_007517  Gmet_0069  response regulator receiver modulated diguanylate cyclase  37.13 
 
 
314 aa  155  1e-36  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.840661 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  31.95 
 
 
314 aa  155  1e-36  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0195  response regulator receiver modulated diguanylate cyclase  35.62 
 
 
309 aa  151  2e-35  Geobacter uraniireducens Rf4  Bacteria  normal  0.0106599  n/a   
 
 
-
 
NC_002939  GSU3376  GGDEF/response regulator receiver domain-containing protein  34.31 
 
 
308 aa  150  3e-35  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2951  response regulator receiver modulated diguanylate cyclase  35.43 
 
 
306 aa  151  3e-35  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_3614  response regulator receiver modulated diguanylate cyclase  33.99 
 
 
310 aa  150  6e-35  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  32.24 
 
 
317 aa  149  1.0000000000000001e-34  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1332  response regulator receiver modulated diguanylate cyclase  35.95 
 
 
306 aa  149  1.0000000000000001e-34  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_1277  response regulator receiver modulated diguanylate cyclase  35.61 
 
 
454 aa  146  5e-34  Maricaulis maris MCS10  Bacteria  normal  0.410696  normal  0.0388481 
 
 
-
 
NC_007958  RPD_3038  response regulator PleD  28.66 
 
 
457 aa  145  1e-33  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.372566  normal  0.319547 
 
 
-
 
NC_013522  Taci_0157  response regulator receiver modulated diguanylate cyclase  34.93 
 
 
917 aa  144  3e-33  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1372  response regulator receiver modulated diguanylate cyclase  29.89 
 
 
436 aa  143  5e-33  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.738866  normal  0.941955 
 
 
-
 
NC_007614  Nmul_A2693  diguanylate cyclase  33.79 
 
 
302 aa  143  6e-33  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1554  response regulator receiver modulated diguanylate cyclase  33.45 
 
 
419 aa  142  9.999999999999999e-33  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2023  response regulator receiver modulated diguanylate cyclase  31.13 
 
 
312 aa  141  1.9999999999999998e-32  Marinomonas sp. MWYL1  Bacteria  normal  0.174701  normal 
 
 
-
 
NC_007778  RPB_2413  response regulator PleD  29.25 
 
 
457 aa  141  1.9999999999999998e-32  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.592932  normal  0.173821 
 
 
-
 
NC_011004  Rpal_3541  response regulator PleD  28.01 
 
 
457 aa  140  3.9999999999999997e-32  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0221  response regulator PleD  27.79 
 
 
460 aa  139  7.999999999999999e-32  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0755  response regulator receiver modulated diguanylate cyclase  34.25 
 
 
298 aa  139  7.999999999999999e-32  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.893944 
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  32.44 
 
 
322 aa  138  2e-31  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_009485  BBta_4746  response regulator PleD  33.46 
 
 
466 aa  137  4e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0979514  normal  0.753316 
 
 
-
 
NC_007406  Nwi_1432  response regulator PleD  27.35 
 
 
457 aa  137  5e-31  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3139  response regulator receiver modulated diguanylate cyclase  29.05 
 
 
676 aa  135  9e-31  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.990746 
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  32.44 
 
 
308 aa  135  9.999999999999999e-31  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  32.44 
 
 
308 aa  135  9.999999999999999e-31  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007964  Nham_2442  response regulator PleD  26.72 
 
 
457 aa  135  9.999999999999999e-31  Nitrobacter hamburgensis X14  Bacteria  normal  0.696702  n/a   
 
 
-
 
NC_011830  Dhaf_1561  response regulator receiver modulated diguanylate cyclase  32.77 
 
 
455 aa  135  9.999999999999999e-31  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000734361  n/a   
 
 
-
 
NC_011146  Gbem_2715  response regulator receiver modulated diguanylate cyclase  35.33 
 
 
314 aa  135  1.9999999999999998e-30  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2326  response regulator receiver modulated diguanylate cyclase  32.08 
 
 
536 aa  134  3e-30  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007954  Sden_3603  GGDEF domain-containing protein  32.67 
 
 
570 aa  134  3e-30  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1830  response regulator receiver modulated diguanylate cyclase  29.16 
 
 
941 aa  134  3.9999999999999996e-30  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3308  response regulator PleD  28.21 
 
 
457 aa  134  3.9999999999999996e-30  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.268667  normal 
 
 
-
 
NC_007298  Daro_0709  response regulator receiver modulated diguanylate cyclase  33.23 
 
 
322 aa  133  5e-30  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.169559 
 
 
-
 
NC_011894  Mnod_7417  response regulator receiver modulated diguanylate cyclase  30.71 
 
 
457 aa  133  6e-30  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.196799  n/a   
 
 
-
 
NC_011145  AnaeK_3557  response regulator receiver modulated diguanylate cyclase  32.48 
 
 
322 aa  133  6.999999999999999e-30  Anaeromyxobacter sp. K  Bacteria  normal  0.457648  n/a   
 
 
-
 
NC_007760  Adeh_3473  response regulator receiver modulated diguanylate cyclase  32.48 
 
 
351 aa  132  7.999999999999999e-30  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1525  response regulator receiver modulated diguanylate cyclase  34.71 
 
 
316 aa  132  1.0000000000000001e-29  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.15223e-23 
 
 
-
 
NC_002939  GSU1643  GGDEF/response regulator receiver domain-containing protein  34.1 
 
 
316 aa  132  1.0000000000000001e-29  Geobacter sulfurreducens PCA  Bacteria  normal  0.176359  n/a   
 
 
-
 
NC_010506  Swoo_1513  response regulator receiver modulated diguanylate cyclase  33.33 
 
 
301 aa  132  1.0000000000000001e-29  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0153071 
 
 
-
 
NC_011662  Tmz1t_3851  response regulator receiver modulated diguanylate cyclase  30.41 
 
 
634 aa  132  1.0000000000000001e-29  Thauera sp. MZ1T  Bacteria  normal  0.0571122  n/a   
 
 
-
 
NC_007404  Tbd_2023  response regulator receiver modulated diguanylate cyclase  31.41 
 
 
632 aa  131  2.0000000000000002e-29  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_3625  response regulator receiver modulated diguanylate cyclase  32.06 
 
 
322 aa  131  2.0000000000000002e-29  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5043  response regulator receiver modulated diguanylate cyclase  33.11 
 
 
300 aa  131  2.0000000000000002e-29  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00853617 
 
 
-
 
NC_007802  Jann_3131  response regulator receiver modulated diguanylate cyclase  34.43 
 
 
464 aa  130  3e-29  Jannaschia sp. CCS1  Bacteria  normal  normal  0.308445 
 
 
-
 
NC_011891  A2cp1_2397  response regulator receiver modulated diguanylate cyclase  31.27 
 
 
434 aa  130  4.0000000000000003e-29  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.593336  n/a   
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  31.56 
 
 
337 aa  130  4.0000000000000003e-29  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_009784  VIBHAR_05729  putative diguanylate cyclase  32.25 
 
 
323 aa  130  4.0000000000000003e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007912  Sde_3005  response regulator receiver modulated diguanylate cyclase  31.6 
 
 
303 aa  130  6e-29  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.000288968 
 
 
-
 
NC_008554  Sfum_0719  response regulator receiver modulated diguanylate cyclase  34.75 
 
 
307 aa  130  6e-29  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3790  response regulator receiver modulated diguanylate cyclase  32.42 
 
 
300 aa  129  7.000000000000001e-29  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1507  response regulator receiver modulated diguanylate cyclase  33.11 
 
 
308 aa  129  9.000000000000001e-29  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.914031 
 
 
-
 
NC_007484  Noc_1271  hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase  31.23 
 
 
1499 aa  129  9.000000000000001e-29  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.422796  n/a   
 
 
-
 
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