More than 300 homologs were found in PanDaTox collection
for query gene Dvul_2323 on replicon NC_008751
Organism: Desulfovibrio vulgaris DP4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008751  Dvul_2323  response regulator receiver modulated diguanylate cyclase  100 
 
 
445 aa  890    Desulfovibrio vulgaris DP4  Bacteria  normal  0.123075  unclonable  0.0000172862 
 
 
-
 
NC_007575  Suden_1780  diguanylate cyclase  38.31 
 
 
414 aa  303  3.0000000000000004e-81  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2855  response regulator receiver modulated diguanylate cyclase  37.59 
 
 
415 aa  282  9e-75  Shewanella woodyi ATCC 51908  Bacteria  normal  0.220747  hitchhiker  0.000676798 
 
 
-
 
NC_009831  Ssed_1723  diguanylate cyclase  38 
 
 
420 aa  279  9e-74  Shewanella sediminis HAW-EB3  Bacteria  normal  0.428268  hitchhiker  0.00000158997 
 
 
-
 
NC_013512  Sdel_0659  diguanylate cyclase  35.41 
 
 
417 aa  273  3e-72  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.0149639  n/a   
 
 
-
 
NC_007954  Sden_2518  GGDEF domain-containing protein  36.56 
 
 
407 aa  273  4.0000000000000004e-72  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2466  diguanylate cyclase  37.44 
 
 
406 aa  271  1e-71  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0503371  n/a   
 
 
-
 
NC_011138  MADE_03374  Response regulator containing a CheY-like receiver domain and a GGDEF domain  37.5 
 
 
419 aa  271  2e-71  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.67607  n/a   
 
 
-
 
NC_009802  CCC13826_1984  threonine dehydratase  34.46 
 
 
418 aa  262  1e-68  Campylobacter concisus 13826  Bacteria  normal  0.241676  n/a   
 
 
-
 
NC_009715  CCV52592_0462  3-deoxy-d-manno-octulosonic-acid transferase  32.94 
 
 
422 aa  261  1e-68  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_1193  diguanylate cyclase  33.73 
 
 
415 aa  261  2e-68  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03265  hypothetical protein  37.53 
 
 
403 aa  255  1.0000000000000001e-66  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_1511  response regulator receiver protein  36.63 
 
 
416 aa  254  2.0000000000000002e-66  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_0081  response regulator/GGDEF domain-containing protein  36.12 
 
 
419 aa  254  2.0000000000000002e-66  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00466  Putative two-component system regulatory protein with GGDEF domain  37.71 
 
 
414 aa  252  8.000000000000001e-66  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.6149  n/a   
 
 
-
 
NC_008228  Patl_4080  diguanylate cyclase  36.71 
 
 
418 aa  252  9.000000000000001e-66  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1684  response regulator receiver modulated diguanylate cyclase  36.43 
 
 
400 aa  250  5e-65  Shewanella pealeana ATCC 700345  Bacteria  normal  0.16221  n/a   
 
 
-
 
NC_007643  Rru_A0085  response regulator receiver modulated diguanylate cyclase  38.06 
 
 
453 aa  249  6e-65  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0581  response regulator  35.17 
 
 
417 aa  248  1e-64  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000040809  n/a   
 
 
-
 
NC_012850  Rleg_2407  response regulator receiver modulated diguanylate cyclase  37.92 
 
 
443 aa  248  1e-64  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0296488 
 
 
-
 
NC_011071  Smal_1334  response regulator receiver modulated diguanylate cyclase  39.71 
 
 
447 aa  243  6e-63  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1933  response regulator receiver modulated diguanylate cyclase  34.69 
 
 
411 aa  239  5.999999999999999e-62  Marinomonas sp. MWYL1  Bacteria  normal  0.380329  normal 
 
 
-
 
NC_011138  MADE_00199  response regulator/GGDEF domain protein  33.01 
 
 
426 aa  239  8e-62  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_2233  response regulator receiver modulated diguanylate cyclase  37.59 
 
 
428 aa  236  6e-61  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3346  response regulator/GGDEF domain-containing protein  33.66 
 
 
417 aa  234  2.0000000000000002e-60  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2153  response regulator receiver modulated diguanylate cyclase  37.92 
 
 
443 aa  233  5e-60  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.257798  normal  0.276429 
 
 
-
 
NC_009439  Pmen_0478  response regulator receiver modulated diguanylate cyclase  36.96 
 
 
422 aa  231  2e-59  Pseudomonas mendocina ymp  Bacteria  normal  0.60604  normal 
 
 
-
 
NC_007912  Sde_0621  response regulator receiver modulated diguanylate cyclase  33.25 
 
 
415 aa  224  2e-57  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.649156 
 
 
-
 
NC_010506  Swoo_3514  response regulator receiver modulated diguanylate cyclase  31.38 
 
 
427 aa  212  9e-54  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1937  response regulator receiver protein  41.11 
 
 
269 aa  174  1.9999999999999998e-42  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007519  Dde_0178  response regulator receiver domain-containing protein  39.04 
 
 
272 aa  171  2e-41  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0579  response regulator receiver sensor signal transduction histidine kinase  38.7 
 
 
487 aa  170  5e-41  Desulfovibrio vulgaris DP4  Bacteria  normal  0.721447  normal 
 
 
-
 
NC_003912  CJE0746  response regulator/GGDEF domain-containing protein  26.33 
 
 
414 aa  169  7e-41  Campylobacter jejuni RM1221  Bacteria  normal  0.0447686  n/a   
 
 
-
 
NC_008787  CJJ81176_0671  response regulator/GGDEF domain-containing protein  26.33 
 
 
414 aa  169  7e-41  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1356  response regulator/GGDEF domain-containing protein  26.09 
 
 
414 aa  168  2e-40  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2852  response regulator receiver protein  40.24 
 
 
268 aa  165  2.0000000000000002e-39  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0180  response regulator receiver domain-containing protein  38.43 
 
 
273 aa  162  8.000000000000001e-39  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3271  PAS/PAC sensor hybrid histidine kinase  36.84 
 
 
1691 aa  159  9e-38  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1131  response regulator receiver sensor signal transduction histidine kinase  35.05 
 
 
500 aa  158  2e-37  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013223  Dret_0825  response regulator receiver modulated serine phosphatase  28.97 
 
 
526 aa  157  5.0000000000000005e-37  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.126425  normal  0.339318 
 
 
-
 
NC_012039  Cla_0652  two component response regulator  27.73 
 
 
414 aa  156  8e-37  Campylobacter lari RM2100  Bacteria  normal  0.267728  n/a   
 
 
-
 
NC_002939  GSU3376  GGDEF/response regulator receiver domain-containing protein  39.1 
 
 
308 aa  155  1e-36  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2154  response regulator receiver protein  33.46 
 
 
268 aa  154  2.9999999999999998e-36  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.193377  normal  0.527206 
 
 
-
 
NC_011989  Avi_2726  two component response regulator  34.13 
 
 
277 aa  153  7e-36  Agrobacterium vitis S4  Bacteria  normal  0.54081  n/a   
 
 
-
 
NC_012850  Rleg_2408  response regulator receiver protein  33.46 
 
 
276 aa  152  8.999999999999999e-36  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.10805 
 
 
-
 
NC_007517  Gmet_0069  response regulator receiver modulated diguanylate cyclase  37.79 
 
 
314 aa  152  1e-35  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.840661 
 
 
-
 
NC_009483  Gura_0195  response regulator receiver modulated diguanylate cyclase  36.42 
 
 
309 aa  151  2e-35  Geobacter uraniireducens Rf4  Bacteria  normal  0.0106599  n/a   
 
 
-
 
NC_008577  Shewana3_2212  response regulator receiver modulated diguanylate cyclase  28.17 
 
 
543 aa  150  6e-35  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1846  response regulator receiver modulated diguanylate cyclase  36.67 
 
 
314 aa  149  1.0000000000000001e-34  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3614  response regulator receiver modulated diguanylate cyclase  35.06 
 
 
310 aa  148  2.0000000000000003e-34  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1795  response regulator receiver protein  34.11 
 
 
274 aa  145  1e-33  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00918371  hitchhiker  0.000651153 
 
 
-
 
NC_010002  Daci_1507  response regulator receiver modulated diguanylate cyclase  38.24 
 
 
308 aa  145  1e-33  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.914031 
 
 
-
 
NC_008321  Shewmr4_2087  response regulator receiver modulated diguanylate cyclase  28.64 
 
 
544 aa  142  9.999999999999999e-33  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1887  response regulator receiver modulated diguanylate cyclase  28.64 
 
 
544 aa  142  9.999999999999999e-33  Shewanella sp. MR-7  Bacteria  normal  normal  0.374169 
 
 
-
 
NC_002939  GSU1643  GGDEF/response regulator receiver domain-containing protein  34.82 
 
 
316 aa  140  4.999999999999999e-32  Geobacter sulfurreducens PCA  Bacteria  normal  0.176359  n/a   
 
 
-
 
NC_008346  Swol_0600  response regulator receiver protein  33.11 
 
 
301 aa  139  8.999999999999999e-32  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1554  response regulator receiver modulated diguanylate cyclase  31.54 
 
 
419 aa  138  2e-31  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2358  response regulator receiver modulated diguanylate cyclase  28.1 
 
 
546 aa  137  3.0000000000000003e-31  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2104  response regulator receiver modulated diguanylate cyclase  28.1 
 
 
546 aa  137  3.0000000000000003e-31  Shewanella baltica OS223  Bacteria  normal  0.0835719  normal 
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  29.9 
 
 
317 aa  137  4e-31  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3473  response regulator receiver modulated diguanylate cyclase  35.65 
 
 
351 aa  137  4e-31  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2118  response regulator receiver modulated diguanylate cyclase  27.93 
 
 
546 aa  137  5e-31  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2241  response regulator receiver modulated diguanylate cyclase  27.93 
 
 
546 aa  136  7.000000000000001e-31  Shewanella baltica OS185  Bacteria  normal  0.195601  n/a   
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  32.52 
 
 
337 aa  135  9.999999999999999e-31  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_011891  A2cp1_3625  response regulator receiver modulated diguanylate cyclase  35.35 
 
 
322 aa  135  9.999999999999999e-31  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2127  response regulator  27.25 
 
 
544 aa  134  1.9999999999999998e-30  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007912  Sde_2463  response regulator receiver modulated diguanylate cyclase  33.44 
 
 
301 aa  134  1.9999999999999998e-30  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_3557  response regulator receiver modulated diguanylate cyclase  35.28 
 
 
322 aa  135  1.9999999999999998e-30  Anaeromyxobacter sp. K  Bacteria  normal  0.457648  n/a   
 
 
-
 
NC_007912  Sde_0667  response regulator receiver domain-containing protein  31.58 
 
 
1526 aa  133  6.999999999999999e-30  Saccharophagus degradans 2-40  Bacteria  normal  0.0280955  hitchhiker  0.000000898802 
 
 
-
 
NC_011726  PCC8801_2041  response regulator receiver modulated diguanylate cyclase  30.9 
 
 
317 aa  132  1.0000000000000001e-29  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_1830  response regulator receiver modulated diguanylate cyclase  32.55 
 
 
941 aa  132  1.0000000000000001e-29  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_2067  response regulator receiver modulated diguanylate cyclase  30.9 
 
 
317 aa  132  1.0000000000000001e-29  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B3647  response regulator receiver modulated diguanylate cyclase  34.06 
 
 
359 aa  132  2.0000000000000002e-29  Ralstonia eutropha JMP134  Bacteria  normal  0.745021  n/a   
 
 
-
 
NC_008609  Ppro_1341  response regulator receiver modulated diguanylate cyclase  31.06 
 
 
319 aa  132  2.0000000000000002e-29  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2951  response regulator receiver modulated diguanylate cyclase  34.98 
 
 
306 aa  130  3e-29  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008740  Maqu_3442  response regulator receiver modulated diguanylate cyclase  30.3 
 
 
539 aa  131  3e-29  Marinobacter aquaeolei VT8  Bacteria  normal  0.677434  n/a   
 
 
-
 
NC_010505  Mrad2831_0755  response regulator receiver modulated diguanylate cyclase  33 
 
 
298 aa  130  4.0000000000000003e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.893944 
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  32.14 
 
 
312 aa  130  5.0000000000000004e-29  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1332  response regulator receiver modulated diguanylate cyclase  34.98 
 
 
306 aa  130  6e-29  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1432  response regulator PleD  32.68 
 
 
457 aa  129  1.0000000000000001e-28  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2442  response regulator receiver modulated diguanylate cyclase  32.9 
 
 
316 aa  129  1.0000000000000001e-28  Geobacter lovleyi SZ  Bacteria  normal  0.103678  n/a   
 
 
-
 
NC_010623  Bphy_5389  response regulator receiver modulated diguanylate cyclase  32.81 
 
 
372 aa  129  1.0000000000000001e-28  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1484  response regulator receiver modulated diguanylate cyclase  31.76 
 
 
555 aa  128  2.0000000000000002e-28  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.0158649 
 
 
-
 
NC_013173  Dbac_0019  response regulator receiver modulated diguanylate cyclase  32.52 
 
 
341 aa  128  2.0000000000000002e-28  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0416556  n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  30.07 
 
 
308 aa  128  2.0000000000000002e-28  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  30.07 
 
 
308 aa  128  2.0000000000000002e-28  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_0623  response regulator receiver modulated diguanylate cyclase  29.49 
 
 
556 aa  127  3e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.322116  normal 
 
 
-
 
NC_013522  Taci_0157  response regulator receiver modulated diguanylate cyclase  33.33 
 
 
917 aa  127  3e-28  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_16500  two-component response regulator  32.81 
 
 
347 aa  128  3e-28  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.67066  normal 
 
 
-
 
NC_013411  GYMC61_2326  response regulator receiver modulated diguanylate cyclase  29.93 
 
 
536 aa  127  5e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007912  Sde_2383  response regulator receiver modulated diguanylate cyclase  30.69 
 
 
434 aa  127  5e-28  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.00665942 
 
 
-
 
NC_011831  Cagg_0841  response regulator receiver modulated diguanylate cyclase  30.75 
 
 
715 aa  127  5e-28  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.101081  normal 
 
 
-
 
NC_007614  Nmul_A2693  diguanylate cyclase  31.13 
 
 
302 aa  126  6e-28  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2032  response regulator receiver modulated diguanylate cyclase  32.78 
 
 
310 aa  127  6e-28  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4837  response regulator  29.18 
 
 
551 aa  125  1e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.978785  n/a   
 
 
-
 
NC_010338  Caul_1497  response regulator PleD  32.89 
 
 
454 aa  126  1e-27  Caulobacter sp. K31  Bacteria  normal  normal  0.122959 
 
 
-
 
NC_013739  Cwoe_3139  response regulator receiver modulated diguanylate cyclase  30.73 
 
 
676 aa  125  1e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.990746 
 
 
-
 
NC_010506  Swoo_1513  response regulator receiver modulated diguanylate cyclase  31.14 
 
 
301 aa  126  1e-27  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0153071 
 
 
-
 
NC_010322  PputGB1_1099  response regulator receiver modulated diguanylate cyclase  33.54 
 
 
334 aa  125  1e-27  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1436  two-component response regulator  32.5 
 
 
327 aa  125  2e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  0.462819  n/a   
 
 
-
 
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