| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1723 |
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| Symbol | |
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| ID | 5609636 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2069434 |
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| End bp | 2070696 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932593 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001473462 |
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| Protein GI | 157374862 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.428268 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000158997 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGCGTATTT TAGTGGTTGA GGACAGTAAA GTTGTGTCCC GTATTTTACA GCATCTTATC
GCTCAGGAGT TGGGCTGCGA TGTCGATTTC GCAGAAGATC TGGCCAGTGC TAAACAACTA
TTAGAACAAA AAGAGTATTT TGTCGCGATT ACAGATCTAA ACCTACCCGA TGCAAATGAA
GGTGAGATCG TTAAGCTCGT GCTTTCCAAG CAGACTCCTT GCATAGTACT GACCGGAAGT
TTAGATGCAC AGCAACGTAA GCGTTTATTA CAGTTGGGTA TCGTCGATTA TATTTTAAAA
GAAAACCGTT TCAGCTATGA ATATGTGGTG AGACTGGTCG ATAGACTTCA GCGTAATCAA
ACCGTCAAGG TGTTGGTCGC CGATGATTCA GTGGTCAGTC GAAAATTTGT CAGAAGCTTA
CTCGAGCAGC ATCTTTATCA GGTGGTAGAG GCCGATGATG GGAACTCAGC CTGGGAGGTC
TTGCAAAATC AGCCGGATAT TCAACTATTG ATCACCGATT ATAATATGCC GGGCCTGGAC
GGTTTTGGTC TTATTTTAAA GGTCAGAGAG AAATTCAGTC GAGAGGAGCT CGCCATTATC
GGCCTCTCCA GTGACGATGA CGAGAGTCTC TCGGCCCGGT TTATAAAAAA CGGGGCAAAT
GACTTTCTGC AGAAGCCGTT TGTGCATGAA GAGTTTCACT GTCGTGTGCT CAACACCTTA
GATTCACTGG ATATGATCCG TAAACTCTGG GATCAGGCAA ATCTCGATTA TCTTACCGGA
GTGTACAACC GCCGCTATTT CTTTAGTCAG TATGAAGAGC TGATCATACT GAAAAAACAA
AAAAGAGGGG CCTTGACGTT GGCTCTGCTC GATATCGATC TGTTTAAGGG AGTGAATGAC
ACCTATGGTC ATGATGTGGG TGACGAGGTC TTGGTGGAGT TCGCCGCACG GTTAAAACGT
TCTTTTGGTC AACATTTTAC CGTTTCCCGT TTTGGCGGAG AGGAGTTTAT TGTCGCATTC
AGAGGACTGA ATGAAGTGAA GTCCTTTGCT TTGATGGATA AGTTTCGCTC TCAACTGGAA
AGTAAACCAA TATCAACCAG TAGGGGAGAG TTGTCAGTAA CCGTCAGCGC AGGAATCGCG
TCTCTTAGCG ATGATGAGAG CGAAGAGAGC TTAGATACCC TTATCCAGCG CGCCGACAAA
GCCCTGTATG ATGCTAAAGA AGCGGGTCGA AATCTCGTCT GTATCGAGTC AGATCATGAG
TAG
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| Protein sequence | MRILVVEDSK VVSRILQHLI AQELGCDVDF AEDLASAKQL LEQKEYFVAI TDLNLPDANE
GEIVKLVLSK QTPCIVLTGS LDAQQRKRLL QLGIVDYILK ENRFSYEYVV RLVDRLQRNQ
TVKVLVADDS VVSRKFVRSL LEQHLYQVVE ADDGNSAWEV LQNQPDIQLL ITDYNMPGLD
GFGLILKVRE KFSREELAII GLSSDDDESL SARFIKNGAN DFLQKPFVHE EFHCRVLNTL
DSLDMIRKLW DQANLDYLTG VYNRRYFFSQ YEELIILKKQ KRGALTLALL DIDLFKGVND
TYGHDVGDEV LVEFAARLKR SFGQHFTVSR FGGEEFIVAF RGLNEVKSFA LMDKFRSQLE
SKPISTSRGE LSVTVSAGIA SLSDDESEES LDTLIQRADK ALYDAKEAGR NLVCIESDHE
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