| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1684 |
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| Symbol | |
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| ID | 5662080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2043017 |
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| End bp | 2044219 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641236271 |
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| Product | response regulator receiver modulated diguanylate cyclase |
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| Protein accession | YP_001501543 |
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| Protein GI | 157961509 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.16221 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGCGGATTC TAGTGGTCGA AGATAGCAAA ACGGTTTCGC GGGTGATGCG CCATTTGCTT
ACTCAAGAGC TGAGTTGTGA GGTGGATGTT GCGCCAGATA TGGGCAGCGC AAAAGAGTTG
CTGGCCCAAA ATGAGTACTT TGTCGCGATT ACAGATCTGA ACTTACCAGA TGCTCAAGAG
GGAGAGATTG TTAAGTTTGT ATTGGCAAAA CAGATCCCCT GCATAGTGTT AACCGGAAGC
TGGGATGCCG AGCAACGAGA GCGTTTACTT CAGCTGGGTA TCGTTGATTA TGTCTTTAAA
GAAAATCGTT TTAGCTATGA ATATACTGCC AAGCTGGTTA AGCGTTTACG CCGCAATCAA
AGCGTAAAGG TACTGGTTGC CGATGACTCG CTTGTGAGCC GTAAATTTAT CCGAAGTTTA
TTGGAGCAGC ACCTTTTTCA AGTCATCGAG GCTGACGATG GTATTTCAGC GTTAGAAACC
CTTAATGATA ATCCAGATAT CAAACTACTT ATCACAGATT ACAATATGCC TGGCCTAGAT
GGATTCGGGC TTATTATTAA AGTTCGTGAA CAGTTTAGTC GTGAAGAGTT AGTGATTATT
GGCTTATCGA GTGACAGTGA TGAAAGCCTC TCTGCCCGTT TTATCAAAAA TGGCGCAAAT
GATTTTCTAC AGAAGCCTTT TGTCCACGAA GAGTTTCACT GCCGGGTGTT GAACACGTTA
GATGCACTGG ACATGGTGAC ACGGCTTTGG GAGCAGGCAA ACCTAGATTA TCTGACTAAT
GTTTATAATC GCCGTTATTT CTTTAATTTA TACCAAGAAA AGCTAACGGA AATTGCGCAG
AAACAGGGGA CACTGTCTCT GGCATTATTG GATATCGACT TTTTCAAGAA GGTAAACGAT
AGCTATGGTC ATGACGTGGG TGATGAAGTC TTGATTGAGT TTTCCAATCG ATTACAGCAA
TCTTTCTCAC AGCACTTTAA CGTTGCACGT ATTGGCGGCG AAGAGTTTGT GGTCGGATTT
AAAGGCCTTA ACGTCGAAAA GGCTTATGCG CTATTAGATA GTTTTCGTAT GCAGCTCGAA
GCCAACCCCA TTGAAACCTC TAAGGGCATG CTGAATATTA GCGTGAGTAG TGGAGTGGCG
GAGTTTACCC ATACAGAAAA TGTTGATGAG CTGCTTAATC GTGCCGACAT AGGCTTACTA
TGA
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| Protein sequence | MRILVVEDSK TVSRVMRHLL TQELSCEVDV APDMGSAKEL LAQNEYFVAI TDLNLPDAQE
GEIVKFVLAK QIPCIVLTGS WDAEQRERLL QLGIVDYVFK ENRFSYEYTA KLVKRLRRNQ
SVKVLVADDS LVSRKFIRSL LEQHLFQVIE ADDGISALET LNDNPDIKLL ITDYNMPGLD
GFGLIIKVRE QFSREELVII GLSSDSDESL SARFIKNGAN DFLQKPFVHE EFHCRVLNTL
DALDMVTRLW EQANLDYLTN VYNRRYFFNL YQEKLTEIAQ KQGTLSLALL DIDFFKKVND
SYGHDVGDEV LIEFSNRLQQ SFSQHFNVAR IGGEEFVVGF KGLNVEKAYA LLDSFRMQLE
ANPIETSKGM LNISVSSGVA EFTHTENVDE LLNRADIGLL
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