Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1887 |
Symbol | |
ID | 4256846 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 2226242 |
End bp | 2227876 |
Gene Length | 1635 bp |
Protein Length | 544 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638122542 |
Product | response regulator receiver modulated diguanylate cyclase |
Protein accession | YP_737933 |
Protein GI | 114047383 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.374169 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCTTG AAGAATCCTT AGAACAACTA AAACGTCAGT ACTTACATGC ACTACCCGAT AAGAAGAAAC AAATTATCAC CCTGTGGATC TCGCTTCGAA AAAACTGGCA GAGCCATATG CTGTCGGCGG TCTACCGTGA AGTCCATAAC TTAAAAGGCT CCTGCGAAAC TTTTGGCCTT ACCGACACCA AAGAGATTGT CGATAAGCTT GAGCTGCTGT TAAAAAATTT ACTCGATTCG CCCGCCCCTG CGCTGAATGT GATCAAAAGC TTAGATACCC TCTTTCACCA GCTGCTGCAA AATAACCTCC GTGGTGAGCC AGCGGCCCCC GTGGTTGAAG CGCAAATGCA GCACAGCCCC TATAAACCGA CAAAAGCACG GCACGAGTAT CGAATAGCAA TTATTGAGGA TGACAATAAT GTCGGGGCGA TGATAACGAA GCAGCTGCAT GAGTTTGGTT TTAATGTGCA GCACTTTTTA AATTTCACCG ACTTCCTCGA AATTCAAAAT ACCTCGCCCT TCGATTTGAT TTTATTAGAT CTCATCTTGC CCGATTATAC CGAAGAAGCC TTATTTACCG CGGCGACCGA GTTTGAGAAA CACAATACCC GTGTGTTTGT TCTCTCTTCC CGCGGTGATT TTGAGATGCG ACTGCTAGCG ATCCGCGCCA ATGTCAGTGA GTATTTTGTT AAACCCGCCG AAACCACCCT ACTGGTACGC AAGATCCACC AGTGGCTCAA AATGTCAGAA AAACAGCCGC TTAAAATTTT GCTGGTGGAT GATCAGCAAT CCATGGTCGA TTATTTTTCC AGCCTGCTTC GCAGTCATGG GCTGATGGTA AAAGGCATGA CCAAACCCGA GCAAGTACTG CCAACCCTAG AGCAATTTGA GCCAGATCTG TTTATTTTCG ATTTGTATAT GCCCGATGTG AATGGTTTAG AGTTGGCGAA AATGATCCGC CAATTAGATA AATACAGCTC AAGCCCTATC CTAGTGCTCA GCTCCGACGA CACTATGCAG AACAAGGTCA GCATCATTCA GGCGGGGTCC GACGATTTAA TCTCAAAACA AACCGCGCCG AGTTTGTTCG TGACGCAAGT GATTTCCCGC GCCCAGCGTG GCCATGATAT TCGAAGCTCC GCCAGCCGCG ATAGCTTAAC GGGCCTGCTT AATCACACCC AGATCCTCGT TGCTGCCCGC CGCTGTTTTA ACCTCGCCAA ACGTATCAAC TCCTCGGTGT GCATTGCCAT GCTGGACTTA GATCACTTTA AGCAAGTGAA TGATACCTAT GGGCATTCTG GCGGCGACAA AGTGCTGTTG GCCTTTGCCC ATCTGTTGCA GCAATCCCTG CGCCCCGTGG ATTTTATGGG TCGTTACGGC GGCGAAGAAT TTATGCTGGT CTTACCCGAT CTGCCCGCCC CCTTAGCCAT TGCTAAGCTT AATGCTATTC GCGAGAGCTT TAGCCATATT GTGTTTGTCG AAGATGCCGC CGAATTTAAA GTCACCTTAA GCGGAGGGTT AGCCTTCTCG GCCGAATGCG GCGAGTTTCA AGATTGTTTA TTACTAGCGG ATAAAAATCT GTATGAGGCA AAACGTACTG GACGTAACCG TTTGATCACT AACTTAATAA AATAA
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Protein sequence | MSLEESLEQL KRQYLHALPD KKKQIITLWI SLRKNWQSHM LSAVYREVHN LKGSCETFGL TDTKEIVDKL ELLLKNLLDS PAPALNVIKS LDTLFHQLLQ NNLRGEPAAP VVEAQMQHSP YKPTKARHEY RIAIIEDDNN VGAMITKQLH EFGFNVQHFL NFTDFLEIQN TSPFDLILLD LILPDYTEEA LFTAATEFEK HNTRVFVLSS RGDFEMRLLA IRANVSEYFV KPAETTLLVR KIHQWLKMSE KQPLKILLVD DQQSMVDYFS SLLRSHGLMV KGMTKPEQVL PTLEQFEPDL FIFDLYMPDV NGLELAKMIR QLDKYSSSPI LVLSSDDTMQ NKVSIIQAGS DDLISKQTAP SLFVTQVISR AQRGHDIRSS ASRDSLTGLL NHTQILVAAR RCFNLAKRIN SSVCIAMLDL DHFKQVNDTY GHSGGDKVLL AFAHLLQQSL RPVDFMGRYG GEEFMLVLPD LPAPLAIAKL NAIRESFSHI VFVEDAAEFK VTLSGGLAFS AECGEFQDCL LLADKNLYEA KRTGRNRLIT NLIK
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