Gene Shewmr7_1887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_1887 
Symbol 
ID4256846 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp2226242 
End bp2227876 
Gene Length1635 bp 
Protein Length544 aa 
Translation table11 
GC content47% 
IMG OID638122542 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_737933 
Protein GI114047383 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.374169 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCTTG AAGAATCCTT AGAACAACTA AAACGTCAGT ACTTACATGC ACTACCCGAT 
AAGAAGAAAC AAATTATCAC CCTGTGGATC TCGCTTCGAA AAAACTGGCA GAGCCATATG
CTGTCGGCGG TCTACCGTGA AGTCCATAAC TTAAAAGGCT CCTGCGAAAC TTTTGGCCTT
ACCGACACCA AAGAGATTGT CGATAAGCTT GAGCTGCTGT TAAAAAATTT ACTCGATTCG
CCCGCCCCTG CGCTGAATGT GATCAAAAGC TTAGATACCC TCTTTCACCA GCTGCTGCAA
AATAACCTCC GTGGTGAGCC AGCGGCCCCC GTGGTTGAAG CGCAAATGCA GCACAGCCCC
TATAAACCGA CAAAAGCACG GCACGAGTAT CGAATAGCAA TTATTGAGGA TGACAATAAT
GTCGGGGCGA TGATAACGAA GCAGCTGCAT GAGTTTGGTT TTAATGTGCA GCACTTTTTA
AATTTCACCG ACTTCCTCGA AATTCAAAAT ACCTCGCCCT TCGATTTGAT TTTATTAGAT
CTCATCTTGC CCGATTATAC CGAAGAAGCC TTATTTACCG CGGCGACCGA GTTTGAGAAA
CACAATACCC GTGTGTTTGT TCTCTCTTCC CGCGGTGATT TTGAGATGCG ACTGCTAGCG
ATCCGCGCCA ATGTCAGTGA GTATTTTGTT AAACCCGCCG AAACCACCCT ACTGGTACGC
AAGATCCACC AGTGGCTCAA AATGTCAGAA AAACAGCCGC TTAAAATTTT GCTGGTGGAT
GATCAGCAAT CCATGGTCGA TTATTTTTCC AGCCTGCTTC GCAGTCATGG GCTGATGGTA
AAAGGCATGA CCAAACCCGA GCAAGTACTG CCAACCCTAG AGCAATTTGA GCCAGATCTG
TTTATTTTCG ATTTGTATAT GCCCGATGTG AATGGTTTAG AGTTGGCGAA AATGATCCGC
CAATTAGATA AATACAGCTC AAGCCCTATC CTAGTGCTCA GCTCCGACGA CACTATGCAG
AACAAGGTCA GCATCATTCA GGCGGGGTCC GACGATTTAA TCTCAAAACA AACCGCGCCG
AGTTTGTTCG TGACGCAAGT GATTTCCCGC GCCCAGCGTG GCCATGATAT TCGAAGCTCC
GCCAGCCGCG ATAGCTTAAC GGGCCTGCTT AATCACACCC AGATCCTCGT TGCTGCCCGC
CGCTGTTTTA ACCTCGCCAA ACGTATCAAC TCCTCGGTGT GCATTGCCAT GCTGGACTTA
GATCACTTTA AGCAAGTGAA TGATACCTAT GGGCATTCTG GCGGCGACAA AGTGCTGTTG
GCCTTTGCCC ATCTGTTGCA GCAATCCCTG CGCCCCGTGG ATTTTATGGG TCGTTACGGC
GGCGAAGAAT TTATGCTGGT CTTACCCGAT CTGCCCGCCC CCTTAGCCAT TGCTAAGCTT
AATGCTATTC GCGAGAGCTT TAGCCATATT GTGTTTGTCG AAGATGCCGC CGAATTTAAA
GTCACCTTAA GCGGAGGGTT AGCCTTCTCG GCCGAATGCG GCGAGTTTCA AGATTGTTTA
TTACTAGCGG ATAAAAATCT GTATGAGGCA AAACGTACTG GACGTAACCG TTTGATCACT
AACTTAATAA AATAA
 
Protein sequence
MSLEESLEQL KRQYLHALPD KKKQIITLWI SLRKNWQSHM LSAVYREVHN LKGSCETFGL 
TDTKEIVDKL ELLLKNLLDS PAPALNVIKS LDTLFHQLLQ NNLRGEPAAP VVEAQMQHSP
YKPTKARHEY RIAIIEDDNN VGAMITKQLH EFGFNVQHFL NFTDFLEIQN TSPFDLILLD
LILPDYTEEA LFTAATEFEK HNTRVFVLSS RGDFEMRLLA IRANVSEYFV KPAETTLLVR
KIHQWLKMSE KQPLKILLVD DQQSMVDYFS SLLRSHGLMV KGMTKPEQVL PTLEQFEPDL
FIFDLYMPDV NGLELAKMIR QLDKYSSSPI LVLSSDDTMQ NKVSIIQAGS DDLISKQTAP
SLFVTQVISR AQRGHDIRSS ASRDSLTGLL NHTQILVAAR RCFNLAKRIN SSVCIAMLDL
DHFKQVNDTY GHSGGDKVLL AFAHLLQQSL RPVDFMGRYG GEEFMLVLPD LPAPLAIAKL
NAIRESFSHI VFVEDAAEFK VTLSGGLAFS AECGEFQDCL LLADKNLYEA KRTGRNRLIT
NLIK