Gene Patl_4080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_4080 
Symbol 
ID4175869 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4905076 
End bp4906332 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content47% 
IMG OID638057116 
Productdiguanylate cyclase 
Protein accessionYP_663633 
Protein GI109900378 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCCCAA AAGTCTTGAT AATTGACGAT AACGAACAAA GCGTAGACGT CATTGCCAGC 
TTGATACTCA AAGCACAGTT AACCCCAGTT AAAGCGACTA GCCTGACTGC GGCGCAACAT
ATATTCTCGC ACTCAGCACC TGAAGATTTT TTATGTGCCA TCGTTGATTA TCGCCTGCCA
GACGCCCCCA TCGGTCAAGC GATTGACTTC ACCCTAGCCT CATTTTTACC GACCATAGTG
ACCACCGAAT TCTTAGATCC AGAAACCAGA GCCGGTATCC TGAATAAAAA CGTCATTGAC
TACATTCTGA AAGAAAACGA GCAGGTCTAT GAGTATTTAA GCGTGTTGCT CAGCCGTTTG
CACAAGAATA AGAGTGAAGG TGTATTAGTT GTCGATAACG CAAGAGTCAG CCGTCAGCGC
AGCATTTCGC TGTTACAGCG CCACAACTTT ATGACTCATG AGGCCACCAC CGGCCAACAA
GGTCTTGAGG CGCTCACTCG CTACAGCCAT ATAAAGTTAG TGATTGTTGC TAATAAGTTG
CCTGACATGA CCGGCATTGC ACTGCTCAAT GAAATTCGTA AGCGCGCCTC AAAAGACGAT
ATCGCGGTAA TAGGCTTGTC AGATCACAGT GACACCGGGG TTTCAGCTCG GTTTATTAAA
AGCGGAGCCA ACGATTATCT TGCCCAGCCC TATGGCCAAG AAGAATTCTT ATGCCGGATC
ATGCAAAACA TCGAATATAT CGAAAACATC GAACTGATAC GTAGGGCTGC CAATTCTGAT
TTTCTCACTG GCTTACCGAA TCGGCGACAC TTCTTCGAAC GGGCCGCAGC GGCGACCCAG
CTGGTACCGA AATGCCAAAC TTTGGCACTC ATTGACATCG ACCTATTCAA ATCAGTGAAC
GATACCTATG GCCATGATTG CGGTGATTAC ACCTTACGAG AAATCGCCAA ACTGGTTTCA
TCAACATTTG CGCCGCACAT TCCTGCACGC TTTGGCGGCG AAGAGTTTTG TGTGTTTTTA
CCAAATGTTG ATCTGCCCAG CGCTGTACAA CTCTTCGAAT CGTTTCGTGA GGCATTAGCC
CAGCTCACCT TCAAATTTGA AGGCAAAACG TTTCACTGCA CTGTGAGTAT TGGGCTAACA
GCCATCGCTA CAGGTGGGGT TAATAGTATG CTGCGAAAAG CCGATGAATA CCTCTACCAA
GCCAAGGCTG GCGGTCGCAA TCAAGTGGTA CACGACCCCG TAGAAGAAGT AGTTTAA
 
Protein sequence
MRPKVLIIDD NEQSVDVIAS LILKAQLTPV KATSLTAAQH IFSHSAPEDF LCAIVDYRLP 
DAPIGQAIDF TLASFLPTIV TTEFLDPETR AGILNKNVID YILKENEQVY EYLSVLLSRL
HKNKSEGVLV VDNARVSRQR SISLLQRHNF MTHEATTGQQ GLEALTRYSH IKLVIVANKL
PDMTGIALLN EIRKRASKDD IAVIGLSDHS DTGVSARFIK SGANDYLAQP YGQEEFLCRI
MQNIEYIENI ELIRRAANSD FLTGLPNRRH FFERAAAATQ LVPKCQTLAL IDIDLFKSVN
DTYGHDCGDY TLREIAKLVS STFAPHIPAR FGGEEFCVFL PNVDLPSAVQ LFESFREALA
QLTFKFEGKT FHCTVSIGLT AIATGGVNSM LRKADEYLYQ AKAGGRNQVV HDPVEEVV