Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_4080 |
Symbol | |
ID | 4175869 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4905076 |
End bp | 4906332 |
Gene Length | 1257 bp |
Protein Length | 418 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638057116 |
Product | diguanylate cyclase |
Protein accession | YP_663633 |
Protein GI | 109900378 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCCCAA AAGTCTTGAT AATTGACGAT AACGAACAAA GCGTAGACGT CATTGCCAGC TTGATACTCA AAGCACAGTT AACCCCAGTT AAAGCGACTA GCCTGACTGC GGCGCAACAT ATATTCTCGC ACTCAGCACC TGAAGATTTT TTATGTGCCA TCGTTGATTA TCGCCTGCCA GACGCCCCCA TCGGTCAAGC GATTGACTTC ACCCTAGCCT CATTTTTACC GACCATAGTG ACCACCGAAT TCTTAGATCC AGAAACCAGA GCCGGTATCC TGAATAAAAA CGTCATTGAC TACATTCTGA AAGAAAACGA GCAGGTCTAT GAGTATTTAA GCGTGTTGCT CAGCCGTTTG CACAAGAATA AGAGTGAAGG TGTATTAGTT GTCGATAACG CAAGAGTCAG CCGTCAGCGC AGCATTTCGC TGTTACAGCG CCACAACTTT ATGACTCATG AGGCCACCAC CGGCCAACAA GGTCTTGAGG CGCTCACTCG CTACAGCCAT ATAAAGTTAG TGATTGTTGC TAATAAGTTG CCTGACATGA CCGGCATTGC ACTGCTCAAT GAAATTCGTA AGCGCGCCTC AAAAGACGAT ATCGCGGTAA TAGGCTTGTC AGATCACAGT GACACCGGGG TTTCAGCTCG GTTTATTAAA AGCGGAGCCA ACGATTATCT TGCCCAGCCC TATGGCCAAG AAGAATTCTT ATGCCGGATC ATGCAAAACA TCGAATATAT CGAAAACATC GAACTGATAC GTAGGGCTGC CAATTCTGAT TTTCTCACTG GCTTACCGAA TCGGCGACAC TTCTTCGAAC GGGCCGCAGC GGCGACCCAG CTGGTACCGA AATGCCAAAC TTTGGCACTC ATTGACATCG ACCTATTCAA ATCAGTGAAC GATACCTATG GCCATGATTG CGGTGATTAC ACCTTACGAG AAATCGCCAA ACTGGTTTCA TCAACATTTG CGCCGCACAT TCCTGCACGC TTTGGCGGCG AAGAGTTTTG TGTGTTTTTA CCAAATGTTG ATCTGCCCAG CGCTGTACAA CTCTTCGAAT CGTTTCGTGA GGCATTAGCC CAGCTCACCT TCAAATTTGA AGGCAAAACG TTTCACTGCA CTGTGAGTAT TGGGCTAACA GCCATCGCTA CAGGTGGGGT TAATAGTATG CTGCGAAAAG CCGATGAATA CCTCTACCAA GCCAAGGCTG GCGGTCGCAA TCAAGTGGTA CACGACCCCG TAGAAGAAGT AGTTTAA
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Protein sequence | MRPKVLIIDD NEQSVDVIAS LILKAQLTPV KATSLTAAQH IFSHSAPEDF LCAIVDYRLP DAPIGQAIDF TLASFLPTIV TTEFLDPETR AGILNKNVID YILKENEQVY EYLSVLLSRL HKNKSEGVLV VDNARVSRQR SISLLQRHNF MTHEATTGQQ GLEALTRYSH IKLVIVANKL PDMTGIALLN EIRKRASKDD IAVIGLSDHS DTGVSARFIK SGANDYLAQP YGQEEFLCRI MQNIEYIENI ELIRRAANSD FLTGLPNRRH FFERAAAATQ LVPKCQTLAL IDIDLFKSVN DTYGHDCGDY TLREIAKLVS STFAPHIPAR FGGEEFCVFL PNVDLPSAVQ LFESFREALA QLTFKFEGKT FHCTVSIGLT AIATGGVNSM LRKADEYLYQ AKAGGRNQVV HDPVEEVV
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