| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3346 |
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| Symbol | |
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| ID | 5612112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4068820 |
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| End bp | 4070073 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640934284 |
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| Product | response regulator/GGDEF domain-containing protein |
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| Protein accession | YP_001475078 |
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| Protein GI | 157376478 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGTCA TTGAGGACAA TAAAGCGATT GCATCTGTTA TCGAACACAT AGGTAAGTCG
TTAGGATTTC AGGTCACAAC TGCACACTCT TTTTCTGAAG TAAAAAAGCT TCTGGTTAGT
CATCAGGAGT TCTTCGTTGC GACCGTCGAT TATGGTCTTC CTGATGCCCC TGAGGGGGAG
GTCATTCCCT ACGTGCTGGA TCATGGCATT CCGAGCGTGG TCATGACTGG CAGGATGAAT
GATAAGATAC ACCAGACACT ATTGAACTTA CCCATCATCG ATTACATCAC CAAAGAAAGT
TCTCAAGCTT ACCATTACCT GTTAAGAGTC CTGCATGGTC AATTAGTTAA CCACAAAACC
AGCGTATTAG TGGTCGATGA TTCACTTTCG GTGAGAAGTT ATGTTTGTAG CCTTTTAAAA
CGGAGAAACT TTACCGTTTT TGAGGCTGCT AACGGCGTTA AAGCGTTACA ACTCCTGAAA
GAAAATGCTG AGATAAAGCT ATTAATTACC GACCAGGAGA TGCCTGAAAT GACGGGTATT
GAGCTGGTTC AGGCAATTCG TAAACGGTTT ACTGACAGAG ATTTAATTAT TATCGGGTAT
TCGGGGATCG ACAAAGTTTA CCAATCGGCT CGCTTCATAA AAAGTGGCGC CGATGATTAC
TTGAAGAAGC CTTTCTGTCC TGAGGAGTTT TATTGCCGCA TTTTTAAAAA CATTGAGCAG
TTACATTATA TTGAAGAGAT CAAAATGGCT GCCAATGTCG ACTATCTGAC CTCTTTATCG
AATCGACGTT ATTTCATCGA TCAGTTCGAT GAGCTGTTTG CAGAGATCCT GGATAGCCAT
GACAATTATA TTTTGGCCCT TTTTCATGTG GATGATTTTA TGACCATTAA TGATGACTTC
GGCCATAGCG CGGGGGATCA GGTGTTAATT GAATTTTCCA GGTTGTTAAG TTGTCATTTT
AATGGGCAAT TACTTGCAAG ATTTGGCGGA GCGGAATTTG GCTGTTTACT CTCTGGGGAA
GATTTTTCTA AAAACGAGCA GTGCTTATTA GCATTTAAAG AGAGTGTGAG TAAGCACTCA
TTTGCTTTTG AAGAGAGAGA AATTAAGTGT TCAATTTGCA TCGGTGGCAC CATTATTTCT
GAGCAATCAT CGGTCCATCA ATGCCTTGAA CAGTCAGATG AAGCCTTGCA GCAAGCGCAG
GCGAAAGGAC AGAATCAGAT GGTATTAAAT GGTTTTGTTG AGCTGTCAGA ATAG
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| Protein sequence | MLVIEDNKAI ASVIEHIGKS LGFQVTTAHS FSEVKKLLVS HQEFFVATVD YGLPDAPEGE
VIPYVLDHGI PSVVMTGRMN DKIHQTLLNL PIIDYITKES SQAYHYLLRV LHGQLVNHKT
SVLVVDDSLS VRSYVCSLLK RRNFTVFEAA NGVKALQLLK ENAEIKLLIT DQEMPEMTGI
ELVQAIRKRF TDRDLIIIGY SGIDKVYQSA RFIKSGADDY LKKPFCPEEF YCRIFKNIEQ
LHYIEEIKMA ANVDYLTSLS NRRYFIDQFD ELFAEILDSH DNYILALFHV DDFMTINDDF
GHSAGDQVLI EFSRLLSCHF NGQLLARFGG AEFGCLLSGE DFSKNEQCLL AFKESVSKHS
FAFEEREIKC SICIGGTIIS EQSSVHQCLE QSDEALQQAQ AKGQNQMVLN GFVELSE
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