| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2087 |
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| Symbol | |
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| ID | 4252660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2487203 |
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| End bp | 2488837 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638118711 |
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| Product | response regulator receiver modulated diguanylate cyclase |
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| Protein accession | YP_734217 |
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| Protein GI | 113970424 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCTTG AAGAATCCTT AGAACAACTA AAACGTCAGT ACTTACATGC ACTACCCGAT
AAGAAGAAAC AAATTATCAC CCTGTGGATC TCGCTACGGA AAAACTGGCA GAGCCATATG
CTGTCGGCGG TCTACCGTGA AGTCCATAAC TTAAAAGGCT CCTGCGAAAC TTTTGGCTTG
ACCGACACCA AAGAGATTGT CGATAAACTT GAGCTGCTGT TAAAGAATTT ACTCGATTCG
CCAGCTCCAG CGCTGAATGT GATCAAAAGC TTAGATACCC TCTTTCACCA ACTGCTGCAA
AATAACCTCC GTGGCGAGCC AGCGGCCCCC GTGGTTGAAG CGCAAATGCA GCACAGTCCC
TATAAGCCGA CAAAAGCACG GCACGAGTAT CGAATTGCAA TTATTGAGGA TGACAATAAT
GTCGGGGCGA TGATAACCAA GCAGCTGCAT GAGTTTGGCT TTAATGTGCA GCACTTTTTA
AATTTCACCG ACTTCCTCGA AATTCAAAAT ACCTCGCCCT TCGATTTGAT TCTATTAGAT
CTCATCTTGC CCGATTATAC CGAAGAGGCC TTATTTACCG CGGCGACCGA GTTTGAGAAA
CACAATACCC GTGTATTTGT TCTCTCTTCC CGCGGTGATT TTGAGATGCG ACTGCTGGCG
ATCCGTGCCA ATGTCAGCGA GTATTTTGTT AAACCCGCCG AAACCACCCT ACTGGTACGC
AAGATCCACC AGTGGCTCAA AATGTCAGAA AAACAGCCGC TTAAAATTTT GCTGGTGGAC
GATCAGCAAT CCATGGTCGA TTATTTTTCC AGTCTGCTTC GCAGTCATGG GCTGATGGTG
AAAGGCATGA CCAAACCCGA GCAAGTGCTG CCGACCCTAG AGCAATTTGA GCCAGATCTG
TTTATTTTCG ATTTGTATAT GCCCGATGTG AATGGTTTAG AGCTGGCAAA AATGATCCGC
CAATTAGATA AATACAGCTC AAGCCCTATC CTAGTGCTCA GCTCCGACGA CACTATGCAG
AACAAAGTCA GCATCATTCA GGCGGGTTCC GACGATTTAA TCTCGAAACA AACCGCACCG
AGTTTATTCG TGACGCAAGT GATTTCCCGC GCCCAGCGTG GCCATGATAT TCGAAGCTCC
GCCAGCCGCG ATAGCTTAAC GGGTCTGCTT AATCACACCC AGATCCTCGT TGCTGCCCGC
CGCTGTTTTA ACCTCGCCAA ACGCATCAAC TCCTCGGTGT GCATTGCTAT GCTGGACTTA
GATCACTTTA AACAAGTGAA TGATACCTAT GGGCATTCTG GCGGCGACAA AGTGCTATTA
GCCTTTGCTC ATTTGTTGCA GCAATCCCTG CGCCCCGTGG ATTTTATGGG TCGTTACGGC
GGCGAAGAAT TTATGTTGGT CTTACCCGAT CTGCCCGCCC CCTTAGCCAT TGCTAAGCTT
AATGCTATTC GCGAGAGCTT TAGCCATATT GTGTTTGTTG AAGATGCCGC CGAATTTAAA
GTCACCTTAA GCGGAGGGTT AGCCTTCTCG GCCGAATGCG GCGAGTTTCA AGATTGTTTA
TTACTAGCGG ATAAAAATCT GTATGAGGCA AAACGTACTG GACGTAACCG TTTGATCACT
AACTTAATAA AATAA
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| Protein sequence | MSLEESLEQL KRQYLHALPD KKKQIITLWI SLRKNWQSHM LSAVYREVHN LKGSCETFGL
TDTKEIVDKL ELLLKNLLDS PAPALNVIKS LDTLFHQLLQ NNLRGEPAAP VVEAQMQHSP
YKPTKARHEY RIAIIEDDNN VGAMITKQLH EFGFNVQHFL NFTDFLEIQN TSPFDLILLD
LILPDYTEEA LFTAATEFEK HNTRVFVLSS RGDFEMRLLA IRANVSEYFV KPAETTLLVR
KIHQWLKMSE KQPLKILLVD DQQSMVDYFS SLLRSHGLMV KGMTKPEQVL PTLEQFEPDL
FIFDLYMPDV NGLELAKMIR QLDKYSSSPI LVLSSDDTMQ NKVSIIQAGS DDLISKQTAP
SLFVTQVISR AQRGHDIRSS ASRDSLTGLL NHTQILVAAR RCFNLAKRIN SSVCIAMLDL
DHFKQVNDTY GHSGGDKVLL AFAHLLQQSL RPVDFMGRYG GEEFMLVLPD LPAPLAIAKL
NAIRESFSHI VFVEDAAEFK VTLSGGLAFS AECGEFQDCL LLADKNLYEA KRTGRNRLIT
NLIK
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