| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3271 |
|---|
| Symbol | |
|---|
| ID | 4482189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 4081408 |
|---|
| End bp | 4086483 |
|---|
| Gene Length | 5076 bp |
|---|
| Protein Length | 1691 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639724021 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_867167 |
|---|
| Protein GI | 117926550 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG0784] FOG: CheY-like receiver |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGATT CCAACGACAA GCTAGTAAAC ATCCTGCTGG TGGAGGATTC CAAAAGCTTT
GCTGCCCTGC TCCAAGGGCA GATCCAAAAG CGCTTGGGCT TTCGTGTGGT ATGGGCAGAC
TCTCTCGCCC AAACGCGCCA GCATCTTGAA CAGGCTAAAC ACCCCTTTCT TCTGGCCATA
TTGGATCTGC ACCTGCCCGA CGGCCCCCAC GGCGAGGTGG TGGATCTGGT ACTGCAACAC
AACCTGCCTG CCATTGTGCT GACCGGTGAC AAACAGGTGG AAATGCGCAC CCAACTCTTT
AAAAAGGGTG TGCTGGACTA TTTTGTTAAA GATAACCGCA GCGTCATTGA TGCGGTTATC
CATAGCGTGT TGCGGGTGGC GCGCAACCGC CACTTGACCA TGATGGTGGT GGATGACTCT
CGCAGTGCCC GCGCCGTATT AGGGCAGTTT TTGCAGCGTT ATGGGTTTCA GGTGCGATTG
GCTCAGGATG GGGCTGAGGC TTGGGCGCTG TTGCAAGAGA CGCCCGTGGA TCTGGTTGTG
ACTGACTATG AGATGCCCAA CCTTAATGGT GTGGCACTAA CGGCCAAGCT GCGTAGCCGC
TACAGCCGGG ATGAGATGGG CATTATGGGC CTCTCGTCGG CGGGTCAATC TGAGCTGGCG
GTGGATTTTA TTAAGGCAGG TGCCAACGAT TATATTAACA AACCCTATGA GCCTGAAGAG
CTTATTAGCC GAGTTTACCA AATGGCTGAG AGTGTGGAAC GCTACGGCGA GCTCAACCAG
ATGGTGGCCC GTCACAAGGC CGTGCTGGAT AATGCTCAGG ATGCCATTAT CACCACGGAT
CAGCAGGGTG ATGTGCTGAG CTACAACCCC GCCGCAGAAC GGCTGTTCGG CTACCCACGG
CAAAACGTTA TGGGTGTTTC TCTGACCGAA CGGTTAATCC CTGAATCGTT ACAAAACAAG
CAGGCCCCCT CCTTGACAAA TGCGATGCAT GGAGCGTTGG AAATGGTTCC GAACAAGGGC
CGATTGGAGG CCATTGGTAA GCGCATTGAT GGAGAGCTGA TTGATCTTCA GGTGGCCTTA
TCCGCTATGC CGCAGCAGGG GGGAGAACTC CATTATACCG CCTTTATTCA AGATATTACC
GATAAAAAAC AGTTGCTTAA ATCATTAGAA GAGACCCTCT CTGCGGCGGA GAGCGCCAGT
AAGGCAAAGA GTGCTTTTAT TGCCAATATG AGTCACGAAA TCCGCACCCC CATGAACGCC
GTGTTGGGTT TTACCGATCT GGCTTTGCGT GGAGATCTCT CCCCCAAAGT GCGCGACTAT
TTGGAAAAGA CCAAAAATGC GTCCCATTCG TTGATGGGTA TTATCAACGA TATTTTGGAC
TTCTCCAAGA TGGATGTGGG GCGGCTGGAG CTGGATCCGG TTAAATTTGA TCTGCATTTT
CTATTGGAGC GGTTGGCGGA TCTGTTCAGC AAGCAGGCTG CGGATCATGC GGTGGATCTG
GTCTTTTTGG CCCCTTTAAA TTTTAATCAG GTGCTCTATG GCGATGCCAT GCGGCTGGAG
CAGATTTTCA TTAATTTGAT CCGCAATGCG GTTAAGTTTA CCAAAAATGG TTTTATTACC
GTACGCGCCC AACCCGAGCT GCTGGAGGGG CACCGTGTAC GCCTGACCTG TTCGGTAAGC
GATAGTGGTA TTGGTATTGA TCCCGAACAG CTCCCCCATC TGTTTGCCCC GTTTGTGCAA
GCGGACAGCT CCACCACCCG ACGTTTTGGT GGCACGGGTT TGGGGCTCTC CATAGTCAAG
CGGTTGGTCT CGCTTATGGA TGGCTCGGTG TGGGCCGAGA GTGAGCCGGG TAAGGGCAGC
CAATTTCACT TTGAGATCTT GGTGGATCTG TATGCCGAGG ATCGCCGCAA CCGTAGCCTG
TTGCCGGATG TCCTATGGGG CGAGCGGGTG CTGGTGGTGG ATGACAATCC AGACAGCCGT
GAACATTTGC AGGCACTGCT CAGTGCCTTG AGTCTATCAC CCAGCCTGTG TGCCACGCCA
GCGCAGGCAC GGGCATTGCT GCTTAGTGAG CAGGGTGGGC CGCAGCCTTT TCGGTATCTA
TTGGTCGATT GGGGGTTGCC AGGTAAGGAT GGGGTGGTCG CGGTTATTGA GATGCGGGCC
ATGTTAAAGG CGGAGCTGCC CGAGGGACTA CACCCGCGCA TCATTTTATT AAGCGCCTTT
GGGCAGGATG AGATTAAAAA CCAAGCCGAG CGTGCAGGGG TGGATTATTG TCTGGACAAA
CCCATTAGCC GGGATCGTCT GGTGACGGCC TTGAGTGGCG GTTGGCACGA TCAGGAGCAG
CATAAAGATC GCCGCAAGGT GCAGCAGTTG GCGGCGGAGT CGGAGATCGG TCGTTTGGTA
GGAGGGGCGT ATCTGCTGCT GGTGGAGGAT AATCCCATTA ACCAGCAGGT CGCGGCGGAG
CTGCTGGAGC GGGTCGGTTT GGTGGTGGAC ATTGCGGAAA ATGGTCAGCA AGCGCTGGAT
CGGCTGGCGC GGTTTGAGTA TGACTTGGTG TTGATGGATC TGCACATGCC GGTGATGGAT
GGCAGTGAGG CCATGCAACG CATACGGGCT CAAGAGGCAT GGCGGTCATT GCCGGTGTTG
GCGCTCTCTA CGGGCACCGG GGAGGAAGAG CAGCTGGATT TGCAAGATCT GGGTTTTCAA
GGTTTTTTGC ATAAGCCGAT CCGCCCCGAG CGGCTCTATG GGGCGTTGAA ACGCTGGATT
ACGCGGCCTA CCTTGGATGC CTCTTGGCGG ATTGTGGCGC GGGGGGATGA GGTACCCCTA
TTACGGGGGG TGGATCCTGA GATTGGGATA AACCGTTTAG CGGGCAATCA AGAGTTGTAT
GTGGTTTTGC TATCACGTTT TTTTCAACTG TATGCCGAAG TGTTGCCCAG TATGCAGCAA
CAGCTACAAA GGGGTCAGTG GGCCGTGTTG GGGCGGCAGA TTCATGGGTT GAGAAATCGC
GCGGCGGCCC TGGGTGCGGT GGAGTTGGCC AAGGCGGTGG TGGCCTTAGA ATTGGCCATG
GCCGACGGCC ATGAGGCGAT GATTGAAGCG GCTTTTCAGA GTTTTAGCCA TCGTCTGGAG
CAGGTGTTGC AGGGCATTGC TAGCCATCAG GTTGAGCAGA AGGGGGTGGC GCTCTCCTCG
AATTTGCTCC ACGATGATCT GCCGGAGTTG GTGGTGGACC TGCACCAAGT TGGGCCGCTG
CTGGATCAAC TGGCGGGACG GCTTAAATAC CACAGTATCG ACGCTGCGGC GCTGTTGCAG
GCATTGGGGG AGCTGCTTAA AGAGACCCCT TTAGCGACGG CCTATTGGAC CGTATGTAAG
CAGGTGGATC GCTATAACTT TTATGAGGCA TTGCAGAGCT TTTTGCTTAT TGCCAAGGCA
TTGAAGTACC CAATTATTGA TCAAAATGTG CGGTGTCCAG CCAGTGTAAA AGAGCGGATT
TTGATCGTGG ATGATCAGCC GGACAACGTG GATGTGCTCA AGGATATTTT GGAGGATTAT
GAGCGGATGG CGGCTCTGAG TGGCCCCGAG GCTTTGATGT TGGCCCAGTG TGACCCTGCG
CCGGATATGG TGCTGCTGGA TATTATGATG CCAGAGATGA ACGGTTATGA GGTGTGCCGA
CGCCTTAAAG CGATGGAGGC TACCCAGGAG ATTCCGGTCA TCTTTGTGAG TGCTAAAAAA
GAGGTGGTGG ATGAGGCCGA AGGGTTCCTG ATCGGGGGGG TGGATTATAT CACCAAACCC
TATCATGGGG AGGTGGTTAG GCGGCGCATC CATAGCCAGT TAGAGCTCAA ACGGCATCGG
GAGCGGTTGG AAAAGCAGGT ACGTATGCGC ACCGCCGAGT TGGAGTTGGC CACCCGTGAA
GCGGAGCTCC GTAAGGATGA GGCCGAGGCT GGTAACCGCG CCAAGAGCGA ATTTTTAGCC
ATTATGAGCC ATGAGATCCG CACCCCGTTA AATGCCATTT TGGGCACCCA TGAGTTGCTG
AGTGAAAGTG CGCTTAGCTC TGAGCAGCAA CGGCTTATGG AGATCTCCCG GAATGCGGGT
GAACTGTTGC TTAATTTGGT CAATGAGACC TTGGATCTCG CGAAGATTGA AGCGGGCAAG
TTGGATCTGG AGTATACCAT CTTTGACCTG CCGAGGTTGG TGGAGGAGAT TACCCAAATT
AAACGGGTGG CGGCGGAGCA CAAGGGGGTG CGGTTGGAGA GCGAGATGGC CCTGGAGGTC
CCCCGTTTTG TGATGGGGGA CCCGGACCGT TTGCGCCAGA TCCTGGTTAA TTTGCTCTCC
AACGCCATTA AATTTACCAA CAGCGGCACC GTGAGTTTGC AGATGAGCCG GGGGGTGGCG
GATCGTACCT TTTTTAAAGT GAGTGATACC GGTGTGGGCA TAGCGGCTCA TAGTATGGAG
AAAATTTTCC ATCCCTTTAC CCAGGCGGAT ACCTCCACCA CCCGCAAATT TGGTGGTACC
GGTCTGGGGC TGACCATCTG TAAACATCTG TGCGAAGCCA TGGGGGGAGA TATTCAGGTA
GAGAGTCAGG TGGGGGTGGG GTCGACCTTT AGCGTCAATT TGCCCTTGCC ACGGGCCGAG
AGCTCCATGG ATGAACCCTC AGCCCCAGAA GAGGTGATCG TCGAGCAGGT ACAAGCGCCC
TTACGTATTT TAGCGGTGGA TGATGCCGAG GATAACCGTA AGCTGGTACA AGCCTTTTTA
GCCAAAAGTG GGCACCATCT GGATCTGTGC GAGGATGGTG CGCAAGCCTT GGATCGCTTT
AAGCGCGAAC ACTATGATCT GGTGTTAATG GATCTGCTTA TGCCCGTGCT GGATGGTTAT
GGCGCCACCC GTAAGATACG CCAATGGGAG CAGCAGCAGC ATCGACTACC TACCCCTATC
ATTGCGTTAA CGGCGCTGTC GGTGCGGCGG GATCTGGACA AGGCGCTGGC GTGCGGCTGT
GATTTTTATT TGACCAAACC CTTTCGCAAA CACCAATTGC TGGACGCCAT TTACCGTATT
CACGGTATGT TGGCAGGCTC CATTCACCAA GGTTAA
|
|---|
| Protein sequence | MVDSNDKLVN ILLVEDSKSF AALLQGQIQK RLGFRVVWAD SLAQTRQHLE QAKHPFLLAI
LDLHLPDGPH GEVVDLVLQH NLPAIVLTGD KQVEMRTQLF KKGVLDYFVK DNRSVIDAVI
HSVLRVARNR HLTMMVVDDS RSARAVLGQF LQRYGFQVRL AQDGAEAWAL LQETPVDLVV
TDYEMPNLNG VALTAKLRSR YSRDEMGIMG LSSAGQSELA VDFIKAGAND YINKPYEPEE
LISRVYQMAE SVERYGELNQ MVARHKAVLD NAQDAIITTD QQGDVLSYNP AAERLFGYPR
QNVMGVSLTE RLIPESLQNK QAPSLTNAMH GALEMVPNKG RLEAIGKRID GELIDLQVAL
SAMPQQGGEL HYTAFIQDIT DKKQLLKSLE ETLSAAESAS KAKSAFIANM SHEIRTPMNA
VLGFTDLALR GDLSPKVRDY LEKTKNASHS LMGIINDILD FSKMDVGRLE LDPVKFDLHF
LLERLADLFS KQAADHAVDL VFLAPLNFNQ VLYGDAMRLE QIFINLIRNA VKFTKNGFIT
VRAQPELLEG HRVRLTCSVS DSGIGIDPEQ LPHLFAPFVQ ADSSTTRRFG GTGLGLSIVK
RLVSLMDGSV WAESEPGKGS QFHFEILVDL YAEDRRNRSL LPDVLWGERV LVVDDNPDSR
EHLQALLSAL SLSPSLCATP AQARALLLSE QGGPQPFRYL LVDWGLPGKD GVVAVIEMRA
MLKAELPEGL HPRIILLSAF GQDEIKNQAE RAGVDYCLDK PISRDRLVTA LSGGWHDQEQ
HKDRRKVQQL AAESEIGRLV GGAYLLLVED NPINQQVAAE LLERVGLVVD IAENGQQALD
RLARFEYDLV LMDLHMPVMD GSEAMQRIRA QEAWRSLPVL ALSTGTGEEE QLDLQDLGFQ
GFLHKPIRPE RLYGALKRWI TRPTLDASWR IVARGDEVPL LRGVDPEIGI NRLAGNQELY
VVLLSRFFQL YAEVLPSMQQ QLQRGQWAVL GRQIHGLRNR AAALGAVELA KAVVALELAM
ADGHEAMIEA AFQSFSHRLE QVLQGIASHQ VEQKGVALSS NLLHDDLPEL VVDLHQVGPL
LDQLAGRLKY HSIDAAALLQ ALGELLKETP LATAYWTVCK QVDRYNFYEA LQSFLLIAKA
LKYPIIDQNV RCPASVKERI LIVDDQPDNV DVLKDILEDY ERMAALSGPE ALMLAQCDPA
PDMVLLDIMM PEMNGYEVCR RLKAMEATQE IPVIFVSAKK EVVDEAEGFL IGGVDYITKP
YHGEVVRRRI HSQLELKRHR ERLEKQVRMR TAELELATRE AELRKDEAEA GNRAKSEFLA
IMSHEIRTPL NAILGTHELL SESALSSEQQ RLMEISRNAG ELLLNLVNET LDLAKIEAGK
LDLEYTIFDL PRLVEEITQI KRVAAEHKGV RLESEMALEV PRFVMGDPDR LRQILVNLLS
NAIKFTNSGT VSLQMSRGVA DRTFFKVSDT GVGIAAHSME KIFHPFTQAD TSTTRKFGGT
GLGLTICKHL CEAMGGDIQV ESQVGVGSTF SVNLPLPRAE SSMDEPSAPE EVIVEQVQAP
LRILAVDDAE DNRKLVQAFL AKSGHHLDLC EDGAQALDRF KREHYDLVLM DLLMPVLDGY
GATRKIRQWE QQQHRLPTPI IALTALSVRR DLDKALACGC DFYLTKPFRK HQLLDAIYRI
HGMLAGSIHQ G
|
|---|
| |