Gene Jann_3131 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_3131 
Symbol 
ID3935602 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp3172171 
End bp3173565 
Gene Length1395 bp 
Protein Length464 aa 
Translation table11 
GC content65% 
IMG OID637905502 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_511073 
Protein GI89055622 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.308445 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTAGGGC GTATTCTTGT CGTTGACGAC GTTGCGACCA ACCGGATCGT GATGAAAGTG 
AAACTCACTG CGGCCTGCTA CTCGGTGGAT CAGGCCGAAA ACGGGGCCGC TGCCCTCAAG
GCCGCGCGCG AGACGAAGCC GGATCTCATC CTTCTGGACG TCATGATGCC GGACATGAGC
GGGCTGGACG TCTGTCGCGC GCTCAAAGCC GACCCTGAGA CCGCAGATAT TCCCGTGGTC
CTGATCACCG CCCTCTTTGA TCAAGCCGCC AAGATGGATG GGCTGGAGGC GGGGGCCGAT
GATTTCCTGA CCAAGCCGGT GGAGGAGGTG ACGCTGCTTG CGCGGGTGCG CTCGCTCCTG
CGGGTCAGCG ATTCCGTGCG CGAATTGCGC GCCCGTGATG ATACCGTGTC AGCCTACGGT
TTTGCCGAGG CCGCGCAGGG GTTTGAGGGC AAGGCACGCC CCGGCCATGT GGCGCTTGTG
GCGCCGGGGC CGCGCGGTGC GGTCCTGTGG AAGGCCGCCA TTGATGACCG TATCGGTGGC
GAGGTTCAGA TCATTCCGCG TGAGACGGCC CTGACCCAGG CCACCGGCAC TGGCAACGAC
CCCGATGTCT TCGTGATCTC GGTCGATCTG GCGCAACGCA ATGAAGGGCT TCGCCTGCTC
TCGGATCTGC GGTCCCGCCC CGGCACGCGC CACTCCGCGA TCGTGATGAT CCTGCCCGAG
GGCGATAGCG AGCGGGCCGC GATTGCGCTC GATCTGGGGG CCAACGATGT GCTCCACGAT
CCGTTTGACG CGCAAGAACT GGCCATTCGT ATCTCTGCAC AGCTTGATCG CAAGCGGCAA
TCGGACCGGA TGCGCGCGGG CGTGCGCGCC AGTCTGGAGG CCGCGATCAC CGATCCGCTC
ACCGGCCTTT ACAACCGTCG CTTCGCGCTG CACCGGATGG AGCAGATCAT GGCGCGGCCC
GGCGGCGATC CGGCGGTCAT GATGCTGGAT CTCGATTACT TCAAGCAGAT CAACGACACC
TATGGCCATG CGGCGGGCGA TGCTGTGTTG CAAGAGGTCG CGATCCGGCT GCGCGGGCAG
GTTCAGGCCA ATGACCTTGT TGCGCGTATC GGTGGAGAAG AGTTTCTGGT CGTCCTGTCC
GGAGCCAGTG CGCGGGCCGC GACGGAATGT GCCGAGCGGT TGCGCGCCTG CATCGGCGGG
ATGAGCTTTG ACCTGGGTGG CGACACCTTC CCCGTCCGCG TGACCGCCAG TGTTGGTCTG
TCCCTGCCGG GCAGTTCTGA TCCTCACACG ACCAGCACGC CGGAGGCATT GATCCACAAG
GCCGACACGG CGCTCTATGG CGCCAAGGCC CATGGCCGCG ATCAGGTCAG CCAGATGTGC
GACACCGCCG CCTAG
 
Protein sequence
MVGRILVVDD VATNRIVMKV KLTAACYSVD QAENGAAALK AARETKPDLI LLDVMMPDMS 
GLDVCRALKA DPETADIPVV LITALFDQAA KMDGLEAGAD DFLTKPVEEV TLLARVRSLL
RVSDSVRELR ARDDTVSAYG FAEAAQGFEG KARPGHVALV APGPRGAVLW KAAIDDRIGG
EVQIIPRETA LTQATGTGND PDVFVISVDL AQRNEGLRLL SDLRSRPGTR HSAIVMILPE
GDSERAAIAL DLGANDVLHD PFDAQELAIR ISAQLDRKRQ SDRMRAGVRA SLEAAITDPL
TGLYNRRFAL HRMEQIMARP GGDPAVMMLD LDYFKQINDT YGHAAGDAVL QEVAIRLRGQ
VQANDLVARI GGEEFLVVLS GASARAATEC AERLRACIGG MSFDLGGDTF PVRVTASVGL
SLPGSSDPHT TSTPEALIHK ADTALYGAKA HGRDQVSQMC DTAA