Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1795 |
Symbol | |
ID | 5322653 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1877988 |
End bp | 1878812 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640790733 |
Product | response regulator receiver protein |
Protein accession | YP_001327465 |
Protein GI | 150396998 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00918371 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.000651153 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGTCATTCT TCGGCGTTTC CGGAATGTAC TATTCCGGCG AATCCCTTGG CGAGCACCGG ATCGTGCTTG CCGAGGACTC CCATCTCTTT GCCTCAATGG TCTCAAAGCG GTTGAAGGAG CTTTTCGACA TCGACGTCAT CGTCTGTCGC GACTATGAGG ACCTGCTGTT CGCGGTCGAA AACGCTTCTT TCGCGCCGTC TCTTGCCATT TCCAATATCA ATCTCCCTGG CGCGGAGAAC GGGGAGGCGC TCACCTATCT GATCGATATG AGCGTACCGA CGGTCGTCTT CACCGGCTCG TTCCAGGAGA GCACGCGCGA GGCCATTCTC GCGAAGGATA TTGTAGACTA CGTGATTAAG GACAGCGTCT TTGCCGTCGA CATGCTGGCG GAATCCGTCT GCCGATTCCT GACCAATCAG CAGCACCACG TTTTGATCGT CGACGATAGC CCAACCGCAC GAGCCGTTCT GACGACGCAG TTGAAGCGCC ACAACTTCCG CACGAGCACG GCGGAAAGCG GATTCGCCGC GCTGGAAATC CTGAAGAACA ATTCGGACAT TGCCCTCGTC ATTACCGACT ACAATATGCC GGATATCGAT GGATTCGAGC TTACGCGTCG GATCCGAGCA GCGCACGGCC CACATCAGGT ACGCATCATC GGCGTGTCGT CGTCGATGGA TCGGCTGCTC TCTGCGCGCT TCCTCAAAGC CGGCGGCAAC GATTTTGTCG TCCGGCCCTT CGTAAACGAG GAATTCTACT GCCGCGTCAA CCAGAACCTC GATACGCTGA CCAAGATAAA AACACTGAAC GCGAAGGCGG GATGA
|
Protein sequence | MSFFGVSGMY YSGESLGEHR IVLAEDSHLF ASMVSKRLKE LFDIDVIVCR DYEDLLFAVE NASFAPSLAI SNINLPGAEN GEALTYLIDM SVPTVVFTGS FQESTREAIL AKDIVDYVIK DSVFAVDMLA ESVCRFLTNQ QHHVLIVDDS PTARAVLTTQ LKRHNFRTST AESGFAALEI LKNNSDIALV ITDYNMPDID GFELTRRIRA AHGPHQVRII GVSSSMDRLL SARFLKAGGN DFVVRPFVNE EFYCRVNQNL DTLTKIKTLN AKAG
|
| |